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CPSF4 cleavage and polyadenylation specific factor 4 [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100922359, updated on 8-Mar-2024

Summary

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Gene symbol
CPSF4
Gene description
cleavage and polyadenylation specific factor 4
See related
Ensembl:ENSSHAG00000011533
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
9
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (254940748..254955109, complement)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823515.1 (865074..879782)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene ATP-sensitive inward rectifier potassium channel 12 Neighboring gene ATP synthase membrane subunit f Neighboring gene pentatricopeptide repeat domain 1 Neighboring gene BUD31 homolog Neighboring gene PDGFA associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of mRNA cleavage and polyadenylation specificity factor complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cleavage and polyadenylation specificity factor subunit 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    254940748..254955109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003761567.4 → XP_003761615.1  cleavage and polyadenylation specificity factor subunit 4 isoform X3

    See identical proteins and their annotated locations for XP_003761615.1

    UniProtKB/TrEMBL
    A0A7N4PNA0
    Related
    ENSSHAP00000026182.1, ENSSHAT00000044994.1
    Conserved Domains (1) summary
    COG5084
    Location:25 → 176
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  2. XM_003761566.4 → XP_003761614.1  cleavage and polyadenylation specificity factor subunit 4 isoform X1

    See identical proteins and their annotated locations for XP_003761614.1

    UniProtKB/TrEMBL
    G3WDI8
    Related
    ENSSHAP00000013493.2, ENSSHAT00000013604.2
    Conserved Domains (1) summary
    COG5084
    Location:25 → 211
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]

  3. XM_031940536.1 → XP_031796396.1  cleavage and polyadenylation specificity factor subunit 4 isoform X2

    UniProtKB/TrEMBL
    A0A7N4NJY9
    Related
    ENSSHAP00000024207.1, ENSSHAT00000033129.1
    Conserved Domains (1) summary
    COG5084
    Location:38 → 200
    YTH1; Cleavage and polyadenylation specificity factor (CPSF) Clipper subunit and related makorin family Zn-finger proteins [General function prediction only]
Nucleotide Protein
Heading Accession and Version

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