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YJU2B YJU2 splicing factor homolog B [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100916528, updated on 8-Mar-2024

Summary

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Gene symbol
YJU2B
Gene description
YJU2 splicing factor homolog B
See related
Ensembl:ENSSHAG00000011586
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Also known as
CCDC130
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
11
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 1 NC_045426.1 (649659137..649668549)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 2 Unlocalized Scaffold NW_003823425.1 (872499..882644, complement)

Chromosome 1 - NC_045426.1Genomic Context describing neighboring genes Neighboring gene surfeit locus protein 4-like Neighboring gene integrin beta-1-like Neighboring gene uncharacterized LOC116420760 Neighboring gene methylthioribose-1-phosphate isomerase 1 Neighboring gene uncharacterized LOC116420761 Neighboring gene chromosome 1 C19orf53 homolog

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U2-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
coiled-coil domain-containing protein 130
Names
coiled-coil domain containing 130

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045426.1 Reference mSarHar1.11 Primary Assembly

    Range
    649659137..649668549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023496770.2 → XP_023352538.1  coiled-coil domain-containing protein 130

    UniProtKB/TrEMBL
    G3WDP9
    Related
    ENSSHAP00000013554.1, ENSSHAT00000013666.2
    Conserved Domains (1) summary
    pfam04502
    Location:8 → 232
    DUF572; Family of unknown function (DUF572)

  2. XM_012542099.3 → XP_012397553.1  coiled-coil domain-containing protein 130

    UniProtKB/TrEMBL
    G3WDP9
    Conserved Domains (1) summary
    pfam04502
    Location:8 → 232
    DUF572; Family of unknown function (DUF572)
Nucleotide Protein
Heading Accession and Version

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