U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

COL2A1 collagen type II alpha 1 chain [ Sarcophilus harrisii (Tasmanian devil) ]

Gene ID: 100915177, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
COL2A1
Gene description
collagen type II alpha 1 chain
See related
Ensembl:ENSSHAG00000004561
Gene type
protein coding
RefSeq status
MODEL
Organism
Sarcophilus harrisii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Metatheria; Dasyuromorphia; Dasyuridae; Sarcophilus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 5
Exon count:
54
Annotation release Status Assembly Chr Location
103 current mSarHar1.11 (GCF_902635505.1) 5 NC_045430.1 (95329851..95377260)
102 previous assembly Devil_ref v7.0 (GCF_000189315.1) 5 Unlocalized Scaffold NW_003843727.1 (110687..156888, complement)

Chromosome 5 - NC_045430.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat and SOCS box containing 8 Neighboring gene phosphofructokinase, muscle Neighboring gene SUMO specific peptidase 1 Neighboring gene vitamin D receptor Neighboring gene histone deacetylase 7 Neighboring gene solute carrier family 48 member 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables extracellular matrix structural constituent IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of collagen type II trimer IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(II) chain

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Sarcophilus harrisii Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mSarHar1.11 Primary Assembly

Genomic

  1. NC_045430.1 Reference mSarHar1.11 Primary Assembly

    Range
    95329851..95377260
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_031938041.1 → XP_031793901.1  collagen alpha-1(II) chain isoform X1

    Conserved Domains (5) summary
    PRK07764
    Location:764 → 962
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam00093
    Location:37 → 92
    VWC; von Willebrand factor type C domain
    pfam09606
    Location:325 → 636
    Med15; ARC105 or Med15 subunit of Mediator complex non-fungal
    pfam01391
    Location:808 → 864
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1255 → 1490
    COLFI; Fibrillar collagen C-terminal domain

  2. XM_003772142.3 → XP_003772190.1  collagen alpha-1(II) chain isoform X2

    UniProtKB/TrEMBL
    G3VPV7
    Related
    ENSSHAP00000005212.2, ENSSHAT00000005264.2
    Conserved Domains (3) summary
    pfam01391
    Location:805 → 863
    Collagen; Collagen triple helix repeat (20 copies)
    pfam00093
    Location:37 → 92
    VWC; von Willebrand factor type C domain
    pfam01410
    Location:1257 → 1489
    COLFI; Fibrillar collagen C-terminal domain

  3. XM_031938042.1 → XP_031793902.1  collagen alpha-1(II) chain isoform X3

    UniProtKB/TrEMBL
    A0A7N4PW47
    Related
    ENSSHAP00000043255.1, ENSSHAT00000052822.1
    Conserved Domains (3) summary
    PRK07764
    Location:694 → 892
    PRK07764; DNA polymerase III subunits gamma and tau; Validated
    pfam01391
    Location:738 → 794
    Collagen; Collagen triple helix repeat (20 copies)
    pfam01410
    Location:1185 → 1420
    COLFI; Fibrillar collagen C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.