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LOC100862758 TRAF3 [ Bombyx mori (domestic silkworm) ]

Gene ID: 100862758, updated on 10-May-2024

Summary

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Gene symbol
LOC100862758
Gene description
TRAF3
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bombyx mori
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Lepidoptera; Glossata; Ditrysia; Bombycoidea; Bombycidae; Bombycinae; Bombyx
Orthologs
fruit fly all
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Genomic context

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See LOC100862758 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_01 current ASM3026992v2 (GCF_030269925.1) 14 NC_085120.1 (2128778..2144136, complement)
103 previous assembly Bmori_2016v1.0 (GCF_014905235.1) 14 NC_051371.1 (2129038..2144398, complement)

Chromosome 14 - NC_085120.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101747105 Neighboring gene NEDD8 ultimate buster 1 Neighboring gene lipid droplet defective Neighboring gene uncharacterized LOC101740850

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genomic underpinnings of apoptosis in the silkworm, Bombyx mori. Zhang JY, et al. BMC Genomics, 2010 Oct 31. PMID 21040523, Free PMC Article
  2. Transcriptomic analysis of developmental features of Bombyx mori wing disc during metamorphosis. Ou J, et al. BMC Genomics, 2014 Sep 27. PMID 25261999, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K63-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in tumor necrosis factor-mediated signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
TRAF3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001256987.1 → NP_001243916.1  TRAF3

    See identical proteins and their annotated locations for NP_001243916.1

    Status: PROVISIONAL

    Source sequence(s)
    GQ426309
    UniProtKB/TrEMBL
    E9JEJ2
    Conserved Domains (1) summary
    cl02446
    Location:328 → 487
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

RefSeqs of Annotated Genomes: GCF_030269925.1-RS_2024_01

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3026992v2 Primary Assembly

Genomic

  1. NC_085120.1 Reference ASM3026992v2 Primary Assembly

    Range
    2128778..2144136 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038015184.2 → XP_037871112.1  TRAF3 isoform X1

    UniProtKB/TrEMBL
    A0A8R2QZC8
    Conserved Domains (2) summary
    TIGR02168
    Location:117 → 355
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl02446
    Location:366 → 525
    MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
Nucleotide Protein
Heading Accession and Version

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