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LOC100856725 prolyl-tRNA synthetase associated domain-containing protein 1 [ Canis lupus familiaris (dog) ]

Gene ID: 100856725, updated on 22-Jan-2024

Summary

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Gene symbol
LOC100856725
Gene description
prolyl-tRNA synthetase associated domain-containing protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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Genomic context

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See LOC100856725 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
2
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (57168326..57169840)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (56120464..56122478)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (57439210..57440715)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (56869440..56870954)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (57148673..57150187)

Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein S27a Neighboring gene mitochondrial translational initiation factor 2 Neighboring gene coiled-coil domain containing 88A Neighboring gene uncharacterized LOC111097756 Neighboring gene sushi repeat-containing protein SRPX-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables aminoacyl-tRNA editing activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
prolyl-tRNA synthetase associated domain-containing protein 1; uncharacterized protein LOC100856725

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051814.1 Reference ROS_Cfam_1.0

    Range
    57168326..57169840
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    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038680621.1 → XP_038536549.1  prolyl-tRNA synthetase associated domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LMI8, A0A8C0PRC5, A0A8C0TLS3, A0A8I3NHI9, A0A8P0S8M6
    Conserved Domains (1) summary
    cd04335
    Location:7 → 166
    PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049270.1 Alternate UMICH_Zoey_3.1

    Range
    56869440..56870954
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038489324.1 → XP_038345252.1  prolyl-tRNA synthetase associated domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cd04335
    Location:7 → 166
    PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

    Range
    57148673..57150187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038615227.1 → XP_038471155.1  prolyl-tRNA synthetase associated domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    cd04335
    Location:7 → 166
    PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

    Range
    57439210..57440715
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038551296.1 → XP_038407224.1  prolyl-tRNA synthetase associated domain-containing protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0LMI8, A0A8C0PRC5, A0A8C0TLS3, A0A8I3NHI9, A0A8P0S8M6
    Conserved Domains (1) summary
    cd04335
    Location:7 → 166
    PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    56120464..56122478
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003639328.5 → XP_003639376.2  uncharacterized protein LOC100856725 isoform X2

    UniProtKB/TrEMBL
    A0A8P0TIQ3
    Conserved Domains (1) summary
    cd04335
    Location:190 → 349
    PrdX_deacylase; This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences. The C. sticklandii PrdX protein, a homolog of the ...
Nucleotide Protein
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