U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SCN9A sodium voltage-gated channel alpha subunit 9 [ Canis lupus familiaris (dog) ]

Gene ID: 100855710, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Official Symbol
SCN9Aprovided by VGNC
Official Full Name
sodium voltage-gated channel alpha subunit 9provided by VGNC
Primary source
VGNC:VGNC:45924
See related
Ensembl:ENSCAFG00845017751
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See SCN9A in Genome Data Viewer
Location:
chromosome: 36
Exon count:
27
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 36 NC_051840.1 (11421333..11580725, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 36 NC_006618.4 (11431905..11590849, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 36 NC_049257.1 (11588422..11748250, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 36 NC_049296.1 (11503582..11662869, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 36 NC_049777.1 (11475664..11634434, complement)

Chromosome 36 - NC_051840.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111094186 Neighboring gene tetratricopeptide repeat domain 21B Neighboring gene protein CEBPZOS-like Neighboring gene sodium voltage-gated channel alpha subunit 1 Neighboring gene uncharacterized LOC119867819 Neighboring gene uncharacterized LOC119867818 Neighboring gene uncharacterized LOC102153897 Neighboring gene uncharacterized LOC119867820 Neighboring gene sodium voltage-gated channel alpha subunit 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables voltage-gated sodium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in membrane depolarization during action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuronal action potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sodium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated sodium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
sodium channel protein type 9 subunit alpha

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051840.1 Reference ROS_Cfam_1.0

    Range
    11421333..11580725 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038446944.1 → XP_038302872.1  sodium channel protein type 9 subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0TWN1, A0A8I3P4Z8
    Related
    ENSCAFP00845024965.1, ENSCAFT00845031924.1
    Conserved Domains (5) summary
    cd13433
    Location:1446 → 1498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1179 → 1454
    Ion_trans; Ion transport protein
    pfam06512
    Location:970 → 1175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 682
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1770 → 1817
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_038446943.1 → XP_038302871.1  sodium channel protein type 9 subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C0TWN1, A0A8I3P4Z8
    Related
    ENSCAFP00845024858.1, ENSCAFT00845031763.1
    Conserved Domains (5) summary
    cd13433
    Location:1457 → 1509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1190 → 1465
    Ion_trans; Ion transport protein
    pfam06512
    Location:981 → 1186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 693
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1781 → 1828
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_038446946.1 → XP_038302874.1  sodium channel protein type 9 subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0TTJ9
    Related
    ENSCAFP00845024657.1, ENSCAFT00845031487.1
    Conserved Domains (5) summary
    cd13433
    Location:1346 → 1398
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1079 → 1354
    Ion_trans; Ion transport protein
    pfam06512
    Location:870 → 1075
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:377 → 582
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1670 → 1717
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_038446945.1 → XP_038302873.1  sodium channel protein type 9 subunit alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0TU97, A0A8I3P301
    Conserved Domains (5) summary
    cd13433
    Location:1209 → 1261
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:942 → 1217
    Ion_trans; Ion transport protein
    pfam06512
    Location:733 → 938
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:240 → 445
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1533 → 1580
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049296.1 Alternate UMICH_Zoey_3.1

    Range
    11503582..11662869 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038521016.1 → XP_038376944.1  sodium channel protein type 9 subunit alpha isoform X2

    Conserved Domains (5) summary
    cd13433
    Location:1446 → 1498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1179 → 1454
    Ion_trans; Ion transport protein
    pfam06512
    Location:970 → 1175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 682
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1770 → 1817
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_038521015.1 → XP_038376943.1  sodium channel protein type 9 subunit alpha isoform X1

    Conserved Domains (5) summary
    cd13433
    Location:1457 → 1509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1190 → 1465
    Ion_trans; Ion transport protein
    pfam06512
    Location:981 → 1186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 693
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1781 → 1828
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_038521018.1 → XP_038376946.1  sodium channel protein type 9 subunit alpha isoform X4

    Conserved Domains (5) summary
    cd13433
    Location:1346 → 1398
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1079 → 1354
    Ion_trans; Ion transport protein
    pfam06512
    Location:870 → 1075
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:377 → 582
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1670 → 1717
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_038521017.1 → XP_038376945.1  sodium channel protein type 9 subunit alpha isoform X3

    Conserved Domains (5) summary
    cd13433
    Location:1209 → 1261
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:942 → 1217
    Ion_trans; Ion transport protein
    pfam06512
    Location:733 → 938
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:240 → 445
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1533 → 1580
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049777.1 Alternate UNSW_CanFamBas_1.0

    Range
    11475664..11634434 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038649133.1 → XP_038505061.1  sodium channel protein type 9 subunit alpha isoform X2

  2. XM_038649132.1 → XP_038505060.1  sodium channel protein type 9 subunit alpha isoform X1

  3. XM_038649135.1 → XP_038505063.1  sodium channel protein type 9 subunit alpha isoform X4

  4. XM_038649134.1 → XP_038505062.1  sodium channel protein type 9 subunit alpha isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049257.1 Alternate UU_Cfam_GSD_1.0

    Range
    11588422..11748250 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038584714.1 → XP_038440642.1  sodium channel protein type 9 subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0TWN1, A0A8I3P4Z8
    Conserved Domains (5) summary
    cd13433
    Location:1446 → 1498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1179 → 1454
    Ion_trans; Ion transport protein
    pfam06512
    Location:970 → 1175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 682
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1770 → 1817
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_038584713.1 → XP_038440641.1  sodium channel protein type 9 subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C0TWN1, A0A8I3P4Z8
    Conserved Domains (5) summary
    cd13433
    Location:1457 → 1509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1190 → 1465
    Ion_trans; Ion transport protein
    pfam06512
    Location:981 → 1186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 693
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1781 → 1828
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_038584716.1 → XP_038440644.1  sodium channel protein type 9 subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0TTJ9
    Conserved Domains (5) summary
    cd13433
    Location:1346 → 1398
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1079 → 1354
    Ion_trans; Ion transport protein
    pfam06512
    Location:870 → 1075
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:377 → 582
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1670 → 1717
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_038584715.1 → XP_038440643.1  sodium channel protein type 9 subunit alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0TU97, A0A8I3P301
    Conserved Domains (5) summary
    cd13433
    Location:1209 → 1261
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:942 → 1217
    Ion_trans; Ion transport protein
    pfam06512
    Location:733 → 938
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:240 → 445
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1533 → 1580
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006618.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    11431905..11590849 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038463448.1 → XP_038319376.1  sodium channel protein type 9 subunit alpha isoform X2

    UniProtKB/TrEMBL
    A0A8C0TWN1, A0A8I3P4Z8
    Conserved Domains (5) summary
    cd13433
    Location:1446 → 1498
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1179 → 1454
    Ion_trans; Ion transport protein
    pfam06512
    Location:970 → 1175
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 682
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1770 → 1817
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  2. XM_038463447.1 → XP_038319375.1  sodium channel protein type 9 subunit alpha isoform X1

    UniProtKB/TrEMBL
    A0A8C0TWN1, A0A8I3P4Z8
    Conserved Domains (5) summary
    cd13433
    Location:1457 → 1509
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1190 → 1465
    Ion_trans; Ion transport protein
    pfam06512
    Location:981 → 1186
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:488 → 693
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1781 → 1828
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  3. XM_022414844.1 → XP_022270552.1  sodium channel protein type 9 subunit alpha isoform X4

    UniProtKB/TrEMBL
    A0A8C0TTJ9
    Conserved Domains (5) summary
    cd13433
    Location:1346 → 1398
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:1079 → 1354
    Ion_trans; Ion transport protein
    pfam06512
    Location:870 → 1075
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:377 → 582
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1670 → 1717
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated

  4. XM_022414843.1 → XP_022270551.1  sodium channel protein type 9 subunit alpha isoform X3

    UniProtKB/TrEMBL
    A0A8C0TU97, A0A8I3P301
    Conserved Domains (5) summary
    cd13433
    Location:1209 → 1261
    Na_channel_gate; Inactivation gate of the voltage-gated sodium channel alpha subunits
    pfam00520
    Location:942 → 1217
    Ion_trans; Ion transport protein
    pfam06512
    Location:733 → 938
    Na_trans_assoc; Sodium ion transport-associated
    pfam11933
    Location:240 → 445
    Na_trans_cytopl; Cytoplasmic domain of voltage-gated Na+ ion channel
    pfam16905
    Location:1533 → 1580
    GPHH; Voltage-dependent L-type calcium channel, IQ-associated
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.