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LOC100771017 zinc finger protein with KRAB and SCAN domains 3 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100771017, updated on 19-Dec-2023

Summary

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Gene symbol
LOC100771017
Gene description
zinc finger protein with KRAB and SCAN domains 3
Locus tag
I79_012844
See related
Ensembl:ENSCGRG00015008124
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
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Genomic context

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See LOC100771017 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
3
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614171.1 (351613..363525, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (243793757..243804570)

NW_003614171.1Genomic Context describing neighboring genes Neighboring gene zinc finger with KRAB and SCAN domains 8 Neighboring gene transfer RNA serine (anticodon GCU) Neighboring gene NKAP-like protein Neighboring gene zinc finger and SCAN domain containing 26

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: zinc finger protein with KRAB and SCAN domains 4; zinc finger protein with KRAB and SCAN domains 3
Names
Zinc finger protein with KRAB and SCAN domains 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614171.1 Reference CriGri_1.0 Primary Assembly

    Range
    351613..363525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007646100.4 → XP_007644290.1  LOW QUALITY PROTEIN: zinc finger protein with KRAB and SCAN domains 4 isoform X1

    UniProtKB/TrEMBL
    A0A8C2LAN4
    Conserved Domains (6) summary
    smart00431
    Location:50 → 143
    SCAN; leucine rich region
    COG5048
    Location:293 → 457
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:241 → 261
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:295 → 317
    zf-C2H2; Zinc finger, C2H2 type
    pfam02023
    Location:48 → 121
    SCAN; SCAN domain
    pfam13465
    Location:309 → 334
    zf-H2C2_2; Zinc-finger double domain

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    243793757..243804570
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027409553.2 → XP_027265354.1  zinc finger protein with KRAB and SCAN domains 3 isoform X2

    UniProtKB/TrEMBL
    A0A8C2LAN4, A0A9J7FSQ0
    Related
    ENSCGRP00015010526.2, ENSCGRT00015012925.2
Nucleotide Protein Strain
Heading Accession and Version

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