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Rigi RNA sensor RIG-I [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100766319, updated on 8-Mar-2024

Summary

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Gene symbol
Rigi
Gene description
RNA sensor RIG-I
Locus tag
I79_013254
See related
Ensembl:ENSCGRG00015005680
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
Ddx58
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
17
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614202.1 (286424..335247)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (102313763..102362659)

NW_003614202.1Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 27 Neighboring gene TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase Neighboring gene uncharacterized LOC113834399 Neighboring gene aconitase 1 Neighboring gene uncharacterized LOC103160299

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
antiviral innate immune response receptor RIG-I
Names
DEAD (Asp-Glu-Ala-Asp) box polypeptide 58
DExD/H-box helicase 58
putative ATP-dependent RNA helicase DDX58

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614202.1 Reference CriGri_1.0 Primary Assembly

    Range
    286424..335247
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035458071.1 → XP_035313962.1  antiviral innate immune response receptor RIG-I isoform X1

    UniProtKB/TrEMBL
    A0A061IKY7
    Conserved Domains (5) summary
    COG1111
    Location:242 → 807
    MPH1; ERCC4-related helicase [Replication, recombination and repair]
    cd08817
    Location:100 → 188
    CARD_RIG-I_r2; Caspase activation and recruitment domain found in RIG-I, second repeat
    cd15805
    Location:806 → 919
    RIG-I_C; C-terminal domain of Retinoic acid-inducible gene (RIG)-I protein, a cytoplasmic viral RNA receptor
    cd18073
    Location:242 → 443
    DEXHc_RIG-I_DDX58; DEXH-box helicase domain of RIG-I
    cl14633
    Location:2 → 92
    DD; Death Domain Superfamily of protein-protein interaction domains

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    102313763..102362659
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027403381.2 → XP_027259182.1  antiviral innate immune response receptor RIG-I isoform X2

    UniProtKB/TrEMBL
    A0A061IIX2, A0A061IKY7
    Related
    ENSCGRP00015007372.1, ENSCGRT00015009072.2
Nucleotide Protein Strain
Heading Accession and Version

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