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Pkp1 plakophilin 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100764930, updated on 8-Mar-2024

Summary

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Gene symbol
Pkp1
Gene description
plakophilin 1
Locus tag
I79_004842
See related
Ensembl:ENSCGRG00015023408
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
14
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613706.1 (1703749..1756943, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (53350723..53396313)

NW_003613706.1Genomic Context describing neighboring genes Neighboring gene ladinin 1 Neighboring gene troponin T2, cardiac type Neighboring gene immunoglobulin like and fibronectin type III domain containing 1 Neighboring gene transmembrane protein 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell-cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intermediate filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in adherens junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
plakophilin-1
Names
Plakophilin-1
plakophilin 1 (ectodermal dysplasia/skin fragility syndrome)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613706.1 Reference CriGri_1.0 Primary Assembly

    Range
    1703749..1756943 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_035449833.1 → XP_035305724.1  plakophilin-1 isoform X1

    Conserved Domains (3) summary
    smart00185
    Location:275 → 315
    ARM; Armadillo/beta-catenin-like repeats
    sd00043
    Location:238 → 271
    ARM; armadillo repeat [structural motif]
    pfam00514
    Location:514 → 555
    Arm; Armadillo/beta-catenin-like repeat

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    53350723..53396313
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027417497.2 → XP_027273298.1  plakophilin-1 isoform X2

    UniProtKB/TrEMBL
    A0A8C2M8Z5
    Related
    ENSCGRP00015031074.1, ENSCGRT00015037984.2
Nucleotide Protein Strain
Heading Accession and Version

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