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Vps28 VPS28 subunit of ESCRT-I [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100761380, updated on 8-Mar-2024

Summary

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Gene symbol
Vps28
Gene description
VPS28 subunit of ESCRT-I
See related
Ensembl:ENSCGRG00015021794
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Vps28 in Genome Data Viewer
Location:
chromosome: 2
Exon count:
10
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614411.1 (158316..162707)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 2 NC_048595.1 (373899867..373904051, complement)

NW_003614411.1Genomic Context describing neighboring genes Neighboring gene zinc finger TRAF-type containing 1 Neighboring gene tonsoku like, DNA repair protein Neighboring gene solute carrier family 39 member 4 Neighboring gene cleavage and polyadenylation specific factor 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein-containing complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of ESCRT I complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vacuolar protein sorting-associated protein 28 homolog
Names
VPS28, ESCRT-I subunit
vacuolar protein sorting 28 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614411.1 Reference CriGri_1.0 Primary Assembly

    Range
    158316..162707
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003507656.5 → XP_003507704.1  vacuolar protein sorting-associated protein 28 homolog

    See identical proteins and their annotated locations for XP_003507704.1

    UniProtKB/TrEMBL
    A0A8C2M8L1, G3HWL5
    Conserved Domains (1) summary
    pfam03997
    Location:39 → 219
    VPS28; VPS28 protein

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048595.1 Alternate CriGri-PICRH-1.0

    Range
    373899867..373904051 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027404287.2 → XP_027260088.1  vacuolar protein sorting-associated protein 28 homolog

    UniProtKB/TrEMBL
    A0A8C2M8L1, G3HWL5
    Related
    ENSCGRP00015028809.2, ENSCGRT00015035285.2
Nucleotide Protein Strain
Heading Accession and Version

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