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Rhbdf1 rhomboid 5 homolog 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100759182, updated on 8-Mar-2024

Summary

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Gene symbol
Rhbdf1
Gene description
rhomboid 5 homolog 1
See related
Ensembl:ENSCGRG00015019791
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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See Rhbdf1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
20
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615248.1 (88517..98433)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (46011993..46025226)

NW_003615248.1Genomic Context describing neighboring genes Neighboring gene NPR3 like, GATOR1 complex subunit Neighboring gene uncharacterized LOC118237757 Neighboring gene N-methylpurine DNA glycosylase Neighboring gene small nuclear ribonucleoprotein U11/U12 subunit 25 Neighboring gene interleukin 9 receptor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of epidermal growth factor receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of protein secretion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
inactive rhomboid protein 1
Names
Rhomboid family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615248.1 Reference CriGri_1.0 Primary Assembly

    Range
    88517..98433
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003511846.5 → XP_003511894.1  inactive rhomboid protein 1 isoform X2

    See identical proteins and their annotated locations for XP_003511894.1

    UniProtKB/TrEMBL
    G3IA46
    Conserved Domains (2) summary
    pfam01694
    Location:648 → 789
    Rhomboid; Rhomboid family
    pfam12595
    Location:91 → 308
    Rhomboid_SP; Rhomboid serine protease

  2. XM_007652358.4 → XP_007650548.1  inactive rhomboid protein 1 isoform X2

    See identical proteins and their annotated locations for XP_007650548.1

    UniProtKB/TrEMBL
    G3IA46
    Conserved Domains (2) summary
    pfam01694
    Location:648 → 789
    Rhomboid; Rhomboid family
    pfam12595
    Location:91 → 308
    Rhomboid_SP; Rhomboid serine protease

  3. XM_016980357.3 → XP_016835846.1  inactive rhomboid protein 1 isoform X1

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    46011993..46025226
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027425158.2 → XP_027280959.1  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    G3IA46
    Related
    ENSCGRP00015026065.2, ENSCGRT00015031940.2

  2. XM_027425163.2 → XP_027280964.2  inactive rhomboid protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A9J7GCY4
    Conserved Domains (1) summary
    pfam12595
    Location:128 → 345
    Rhomboid_SP; Rhomboid serine protease

  3. XM_027425162.2 → XP_027280963.1  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    G3IA46

  4. XM_027425160.1 → XP_027280961.1  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    G3IA46
    Related
    ENSCGRP00015026111.1, ENSCGRT00015031991.2

  5. XM_027425161.1 → XP_027280962.1  inactive rhomboid protein 1 isoform X2

    UniProtKB/TrEMBL
    G3IA46
Nucleotide Protein Strain
Heading Accession and Version

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