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Tsen54 tRNA splicing endonuclease subunit 54 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100755913, updated on 8-Mar-2024

Summary

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Gene symbol
Tsen54
Gene description
tRNA splicing endonuclease subunit 54
Locus tag
I79_000920
See related
Ensembl:ENSCGRG00015008966
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Annotation information
Annotation category: partial on reference assembly
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613598.1 (89768..97737, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 7 NC_048600.1 (128400536..128409302)

NW_003613598.1Genomic Context describing neighboring genes Neighboring gene myosin XVB Neighboring gene LLGL scribble cell polarity complex component 2 Neighboring gene CASK interacting protein 2 Neighboring gene transmembrane protein 94

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA-type intron splice site recognition and cleavage IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of tRNA-intron endonuclease complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA-splicing endonuclease subunit Sen54
Names
TSEN54 tRNA splicing endonuclease subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613598.1 Reference CriGri_1.0 Primary Assembly

    Range
    89768..97737 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016975677.2 → XP_016831166.2  tRNA-splicing endonuclease subunit Sen54 isoform X1

    UniProtKB/TrEMBL
    A0A8C2MLX7, A0A8C2QLH9
    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 187
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048600.1 Alternate CriGri-PICRH-1.0

    Range
    128400536..128409302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027425680.2 → XP_027281481.1  tRNA-splicing endonuclease subunit Sen54 isoform X2

    UniProtKB/TrEMBL
    A0A8C2QLH9, A0A9J7GDM2

  2. XM_027425681.2 → XP_027281482.1  tRNA-splicing endonuclease subunit Sen54 isoform X3

    UniProtKB/TrEMBL
    A0A8C2MLX7, A0A8C2QLH9
    Related
    ENSCGRP00015011705.1, ENSCGRT00015014337.2
    Conserved Domains (2) summary
    pfam12928
    Location:63 → 130
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
    cl40623
    Location:116 → 187
    tRNA_int_end_N2; tRNA-splicing endonuclease subunit sen54 N-term
Nucleotide Protein Strain
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