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Dkc1 dyskerin pseudouridine synthase 1 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100755395, updated on 11-Apr-2024

Summary

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Gene symbol
Dkc1
Gene description
dyskerin pseudouridine synthase 1
See related
Ensembl:ENSCGRG00015008295
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: X
Exon count:
15
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614341.1 (721281..735211, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) X NC_048604.1 (739530..753457, complement)

NW_003614341.1Genomic Context describing neighboring genes Neighboring gene coagulation factor VIII Neighboring gene uncharacterized LOC113837626 Neighboring gene small integral membrane protein 9 Neighboring gene MAGUK p55 scaffold protein 1 Neighboring gene small nucleolar RNA SNORA36 family Neighboring gene ubiquitin-60S ribosomal protein L40-like Neighboring gene GRB2 associated binding protein 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables pseudouridine synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in box H/ACA sno(s)RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in rRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA pseudouridine synthesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of box H/ACA snoRNP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
H/ACA ribonucleoprotein complex subunit DKC1
Names
dyskeratosis congenita 1, dyskerin homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614341.1 Reference CriGri_1.0 Primary Assembly

    Range
    721281..735211 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003507242.5 → XP_003507290.1  H/ACA ribonucleoprotein complex subunit DKC1 isoform X1

    See identical proteins and their annotated locations for XP_003507290.1

    UniProtKB/TrEMBL
    A0A061HVP3, G3HV92
    Conserved Domains (1) summary
    cl27547
    Location:56 → 381
    TruB_N; TruB family pseudouridylate synthase (N terminal domain)

  2. XM_027439884.2 → XP_027295685.1  H/ACA ribonucleoprotein complex subunit DKC1 isoform X2

    UniProtKB/TrEMBL
    A0A9J7K0S9

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048604.1 Alternate CriGri-PICRH-1.0

    Range
    739530..753457 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027432487.2 → XP_027288288.1  H/ACA ribonucleoprotein complex subunit DKC1 isoform X1

    UniProtKB/TrEMBL
    A0A061HVP3, G3HV92
    Related
    ENSCGRP00015057959.1, ENSCGRT00015054737.1

  2. XM_027432488.2 → XP_027288289.1  H/ACA ribonucleoprotein complex subunit DKC1 isoform X2

    UniProtKB/TrEMBL
    A0A9J7K0S9
Nucleotide Protein Strain
Heading Accession and Version

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