U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Col8a1 collagen type VIII alpha 1 chain [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100755279, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
Col8a1
Gene description
collagen type VIII alpha 1 chain
See related
Ensembl:ENSCGRG00015006851
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Col8a1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003614098.1 (224943..351223)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 4 NC_048597.1 (34465873..34590846)

NW_003614098.1Genomic Context describing neighboring genes Neighboring gene GDP-fucose transporter 1-like Neighboring gene filamin A interacting protein 1 like Neighboring gene cms1 ribosomal small subunit homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
collagen alpha-1(VIII) chain
Names
Collagen alpha-1(VIII) chain
collagen, type VIII, alpha 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003614098.1 Reference CriGri_1.0 Primary Assembly

    Range
    224943..351223
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027438292.2 → XP_027294093.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0

  2. XM_016976842.3 → XP_016832331.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0
    Conserved Domains (2) summary
    smart00110
    Location:610 → 745
    C1Q; Complement component C1q domain
    pfam01391
    Location:445 → 502
    Collagen; Collagen triple helix repeat (20 copies)

  3. XM_007645368.4 → XP_007643558.1  collagen alpha-1(VIII) chain

    See identical proteins and their annotated locations for XP_007643558.1

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0
    Conserved Domains (2) summary
    smart00110
    Location:610 → 745
    C1Q; Complement component C1q domain
    pfam01391
    Location:445 → 502
    Collagen; Collagen triple helix repeat (20 copies)

  4. XM_003504870.5 → XP_003504918.1  collagen alpha-1(VIII) chain

    See identical proteins and their annotated locations for XP_003504918.1

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0
    Conserved Domains (2) summary
    smart00110
    Location:610 → 745
    C1Q; Complement component C1q domain
    pfam01391
    Location:445 → 502
    Collagen; Collagen triple helix repeat (20 copies)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048597.1 Alternate CriGri-PICRH-1.0

    Range
    34465873..34590846
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027412468.2 → XP_027268269.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0

  2. XM_027412467.2 → XP_027268268.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0

  3. XM_027412466.2 → XP_027268267.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0
    Related
    ENSCGRP00015008869.1, ENSCGRT00015010891.2

  4. XM_027412465.2 → XP_027268266.1  collagen alpha-1(VIII) chain

    UniProtKB/TrEMBL
    A0A061I7V2, G3HMN0
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.