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Calu calumenin [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100750933, updated on 8-Mar-2024

Summary

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Gene symbol
Calu
Gene description
calumenin
See related
Ensembl:ENSCGRG00015025862
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613652.1 (1518262..1547536)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 1 Unlocalized Scaffold NW_023276806.1 (198445617..198474966, complement)

NW_003613652.1Genomic Context describing neighboring genes Neighboring gene golgi associated RAB2 interactor 1B Neighboring gene U6 spliceosomal RNA Neighboring gene opsin 1, short wave sensitive Neighboring gene transfer RNA proline (anticodon AGG)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Unraveling the Chinese hamster ovary cell line transcriptome by next-generation sequencing. Becker J, et al. J Biotechnol, 2011 Dec 10. PMID 21945585

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
calumenin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613652.1 Reference CriGri_1.0 Primary Assembly

    Range
    1518262..1547536
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003497517.4 → XP_003497565.1  calumenin isoform X2

    See identical proteins and their annotated locations for XP_003497565.1

    UniProtKB/TrEMBL
    A0A3L7IID9
    Conserved Domains (1) summary
    cd16228
    Location:37 → 299
    EFh_CREC_Calumenin; EF-hand, calcium binding motif, found in calumenin

  2. XM_007613410.3 → XP_007611600.1  calumenin isoform X1

    UniProtKB/TrEMBL
    A0A8C2LG64
    Conserved Domains (3) summary
    cd00051
    Location:157 → 214
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam13499
    Location:157 → 214
    EF-hand_7; EF-hand domain pair
    cl08302
    Location:193 → 258
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NW_023276806.1 Alternate CriGri-PICRH-1.0

    Range
    198445617..198474966 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027391355.2 → XP_027247156.1  calumenin isoform X1

    UniProtKB/TrEMBL
    A0A8C2LG64

  2. XM_027391356.2 → XP_027247157.1  calumenin isoform X2

    UniProtKB/TrEMBL
    A0A3L7IID9
    Related
    ENSCGRP00015044218.1, ENSCGRT00015084084.1
Nucleotide Protein Strain
Heading Accession and Version

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