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PARL presenilin associated rhomboid like [ Sus scrofa (pig) ]

Gene ID: 100739380, updated on 8-Mar-2024

Summary

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Gene symbol
PARL
Gene description
presenilin associated rhomboid like
See related
Ensembl:ENSSSCG00000033424
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 50.4), heart (RPKM 14.2) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See PARL in Genome Data Viewer
Location:
chromosome: 13
Exon count:
11
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (121758734..121813679, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (131193528..131248518, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene YEATS domain containing 2 Neighboring gene proliferation-associated protein 2G4 pseudogene Neighboring gene MAP6 domain containing 1 Neighboring gene cytochrome P450 family 2 subfamily AB member 1, pseudogene Neighboring gene ATP binding cassette subfamily C member 5

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables serine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
presenilins-associated rhomboid-like protein, mitochondrial

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    121758734..121813679 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021069926.1 → XP_020925585.1  presenilins-associated rhomboid-like protein, mitochondrial isoform X3

    UniProtKB/TrEMBL
    A0A8D1W814
    Conserved Domains (1) summary
    pfam01694
    Location:186 → 331
    Rhomboid; Rhomboid family

  2. XM_021069925.1 → XP_020925584.1  presenilins-associated rhomboid-like protein, mitochondrial isoform X2

    UniProtKB/TrEMBL
    A0A8D1W814
    Conserved Domains (1) summary
    pfam01694
    Location:219 → 364
    Rhomboid; Rhomboid family

  3. XM_003483280.4 → XP_003483328.1  presenilins-associated rhomboid-like protein, mitochondrial isoform X1

    UniProtKB/TrEMBL
    A0A5G2Q7L9, A0A8D1W814
    Related
    ENSSSCP00000059815.2, ENSSSCT00000086037.2
    Conserved Domains (1) summary
    pfam01694
    Location:209 → 350
    Rhomboid; Rhomboid family

  4. XM_021069927.1 → XP_020925586.1  presenilins-associated rhomboid-like protein, mitochondrial isoform X4

    UniProtKB/TrEMBL
    A0A480SDW4
    Conserved Domains (1) summary
    cl21536
    Location:209 → 276
    Rhomboid; Rhomboid family
Nucleotide Protein
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