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SH3TC1 SH3 domain and tetratricopeptide repeats 1 [ Sus scrofa (pig) ]

Gene ID: 100737944, updated on 8-Mar-2024

Summary

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Official Symbol
SH3TC1provided by VGNC
Official Full Name
SH3 domain and tetratricopeptide repeats 1provided by VGNC
Primary source
VGNC:VGNC:109657
See related
Ensembl:ENSSSCG00000008722
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Broad expression in spleen (RPKM 10.7), kidney (RPKM 10.3) and 6 other tissues See more
Orthologs
human mouse all
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Genomic context

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See SH3TC1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
18
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 8 NC_010450.4 (2846004..2884174, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 8 NC_010450.3 (4324680..4354205, complement)

Chromosome 8 - NC_010450.4Genomic Context describing neighboring genes Neighboring gene acyl-CoA oxidase 3, pristanoyl Neighboring gene HtrA serine peptidase 3 Neighboring gene actin binding LIM protein family member 2 Neighboring gene uncharacterized LOC110262049 Neighboring gene microRNA mir-95

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: SH3 domain and tetratricopeptide repeat-containing protein 1
Names
SH3 domain and tetratricopeptide repeat-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010450.4 Reference Sscrofa11.1 Primary Assembly

    Range
    2846004..2884174 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021100954.1 → XP_020956613.1  LOW QUALITY PROTEIN: SH3 domain and tetratricopeptide repeat-containing protein 1

    UniProtKB/TrEMBL
    A0A287AKS9, A0A480J4R4
    Related
    ENSSSCP00000044610.2, ENSSSCT00000056810.3
    Conserved Domains (3) summary
    cd11885
    Location:302 → 355
    SH3_SH3TC; Src Homology 3 domain of SH3 domain and tetratricopeptide repeat-containing (SH3TC) proteins and similar domains
    sd00006
    Location:1145 → 1172
    TPR; TPR repeat [structural motif]
    pfam13424
    Location:1186 → 1259
    TPR_12; Tetratricopeptide repeat
Nucleotide Protein
Heading Accession and Version

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