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CNMD chondromodulin [ Sus scrofa (pig) ]

Gene ID: 100737209, updated on 17-Aug-2024

Summary

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Official Symbol
CNMDprovided by VGNC
Official Full Name
chondromodulinprovided by VGNC
Primary source
VGNC:VGNC:86824
See related
Ensembl:ENSSSCG00000009442
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
LECT1
Expression
Ubiquitous expression in psoas major muscle (RPKM 5.4), heart (RPKM 4.8) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CNMD in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 11 NC_010453.5 (25959192..25994773, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 11 NC_010453.4 (26648222..26666245, complement)

Chromosome 11 - NC_010453.5Genomic Context describing neighboring genes Neighboring gene small integral membrane protein 15-like Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene E74 like ETS transcription factor 1 Neighboring gene SGT1 homolog, MIS12 kinetochore complex assembly cochaperone Neighboring gene protocadherin-8 Neighboring gene olfactomedin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in negative regulation of angiogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of endothelial cell proliferation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leukocyte cell-derived chemotaxin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010453.5 Reference Sscrofa11.1 Primary Assembly

    Range
    25959192..25994773 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021065645.1 → XP_020921304.1  leukocyte cell-derived chemotaxin 1 isoform X2

    UniProtKB/TrEMBL
    A0A480JSH0
    Conserved Domains (1) summary
    smart01039
    Location:131 → 228
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer

  2. XM_021065644.1 → XP_020921303.1  leukocyte cell-derived chemotaxin 1 isoform X1

    UniProtKB/TrEMBL
    A0A480JSH0
    Related
    ENSSSCP00000010081.4, ENSSSCT00000010349.5
    Conserved Domains (1) summary
    smart01039
    Location:131 → 228
    BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer
Nucleotide Protein
Heading Accession and Version

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