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Rfx1 regulatory factor X1 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100736012, updated on 6-Jun-2024

Summary

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Gene symbol
Rfx1
Gene description
regulatory factor X1
See related
Ensembl:ENSCPOG00000010089
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (64989943..65012390, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176377.1 (12833584..12856693)

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106027327 Neighboring gene DDB1 and CUL4 associated factor 15 Neighboring gene relaxin 3 Neighboring gene uncharacterized LOC134471022 Neighboring gene interleukin 27 receptor subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
MHC class II regulatory factor RFX1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    64989943..65012390 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013150915.3 → XP_013006369.1  MHC class II regulatory factor RFX1 isoform X2

    See identical proteins and their annotated locations for XP_013006369.1

    UniProtKB/TrEMBL
    H0VG39
    Conserved Domains (2) summary
    pfam02257
    Location:433 → 509
    RFX_DNA_binding; RFX DNA-binding domain
    pfam04589
    Location:222 → 364
    RFX1_trans_act; RFX1 transcription activation region

  2. XM_063228477.1 → XP_063084547.1  MHC class II regulatory factor RFX1 isoform X1

    UniProtKB/TrEMBL
    H0VG39

  3. XM_063228478.1 → XP_063084548.1  MHC class II regulatory factor RFX1 isoform X1

    UniProtKB/TrEMBL
    H0VG39
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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Molecular Biology Databases
Research Materials