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Irf6 interferon regulatory factor 6 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100729739, updated on 3-Apr-2024

Summary

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Gene symbol
Irf6
Gene description
interferon regulatory factor 6
See related
Ensembl:ENSCPOG00000023829
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Irf6 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947509.1 (18471120..18489266, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176406.1 (14345873..14363417, complement)

NW_026947509.1Genomic Context describing neighboring genes Neighboring gene TRAF3 interacting protein 3 Neighboring gene small ribosomal subunit protein eS27-like Neighboring gene chromosome unknown C1orf74 homolog Neighboring gene UTP25 small subunit processome component Neighboring gene synaptotagmin 14

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in immune system process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
interferon regulatory factor 6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947509.1 Reference mCavPor4.1

    Range
    18471120..18489266 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013157456.3 → XP_013012910.1  interferon regulatory factor 6

    See identical proteins and their annotated locations for XP_013012910.1

    UniProtKB/TrEMBL
    H0VX57
    Conserved Domains (2) summary
    pfam00605
    Location:9 → 114
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:224 → 407
    IRF-3; Interferon-regulatory factor 3

  2. XM_003474271.4 → XP_003474319.1  interferon regulatory factor 6

    See identical proteins and their annotated locations for XP_003474319.1

    UniProtKB/TrEMBL
    H0VX57
    Related
    ENSCPOP00000015286.1
    Conserved Domains (2) summary
    pfam00605
    Location:9 → 114
    IRF; Interferon regulatory factor transcription factor
    pfam10401
    Location:224 → 407
    IRF-3; Interferon-regulatory factor 3

  3. XM_063236807.1 → XP_063092877.1  interferon regulatory factor 6

    UniProtKB/TrEMBL
    H0VX57

  4. XM_063236808.1 → XP_063092878.1  interferon regulatory factor 6

    UniProtKB/TrEMBL
    H0VX57
Nucleotide Protein
Heading Accession and Version

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