U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Hdac5 histone deacetylase 5 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100722799, updated on 6-Jun-2024

Summary

Go to the top of the page Help
Gene symbol
Hdac5
Gene description
histone deacetylase 5
See related
Ensembl:ENSCPOG00000025458
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
28
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947489.1 (95284058..95307459, complement)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176352.1 (9483330..9506707)

NW_026947489.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134476569 Neighboring gene glucose-6-phosphatase catalytic subunit 3 Neighboring gene homologous recombination factor with OB-fold Neighboring gene ankyrin repeat and SOCS box containing 16

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone deacetylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
histone deacetylase 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947489.1 Reference mCavPor4.1

    Range
    95284058..95307459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_013148179.2 → XP_013003633.1  histone deacetylase 5 isoform X5

    UniProtKB/TrEMBL
    A0A286XU74
    Conserved Domains (2) summary
    cl17011
    Location:670 → 1088
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl23765
    Location:65 → 129
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  2. XM_005001898.3 → XP_005001955.1  histone deacetylase 5 isoform X8

    UniProtKB/TrEMBL
    A0A286XU74
    Related
    ENSCPOP00000029087.1
    Conserved Domains (2) summary
    cl17011
    Location:666 → 1084
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl23765
    Location:66 → 130
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  3. XM_013148178.2 → XP_013003632.1  histone deacetylase 5 isoform X4

    UniProtKB/TrEMBL
    A0A286XU74
    Related
    ENSCPOP00000021954.1
    Conserved Domains (2) summary
    cl17011
    Location:671 → 1089
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl23765
    Location:66 → 130
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  4. XM_063251667.1 → XP_063107737.1  histone deacetylase 5 isoform X2

    UniProtKB/TrEMBL
    A0A286XU74

  5. XM_063251666.1 → XP_063107736.1  histone deacetylase 5 isoform X1

    UniProtKB/TrEMBL
    A0A286XU74

  6. XM_063251669.1 → XP_063107739.1  histone deacetylase 5 isoform X6

    UniProtKB/TrEMBL
    A0A286XU74

  7. XM_013148176.3 → XP_013003630.1  histone deacetylase 5 isoform X3

    UniProtKB/TrEMBL
    A0A286XU74
    Related
    ENSCPOP00000014276.2
    Conserved Domains (2) summary
    cl17011
    Location:690 → 1108
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl23765
    Location:85 → 149
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits

  8. XM_013148177.3 → XP_013003631.1  histone deacetylase 5 isoform X7

    UniProtKB/TrEMBL
    A0A286XU74
    Conserved Domains (2) summary
    cl17011
    Location:685 → 1103
    Arginase_HDAC; Arginase-like and histone-like hydrolases
    cl23765
    Location:85 → 149
    iSH2_PI3K_IA_R; Inter-Src homology 2 (iSH2) helical domain of Class IA Phosphoinositide 3-kinase Regulatory subunits
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.