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Xab2 XPA binding protein 2 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100719499, updated on 8-Mar-2024

Summary

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Gene symbol
Xab2
Gene description
XPA binding protein 2
See related
Ensembl:ENSCPOG00000009283
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947500.1 (63049143..63056786)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176377.1 (14868510..14876105, complement)

NW_026947500.1Genomic Context describing neighboring genes Neighboring gene protein PET100 homolog, mitochondrial Neighboring gene Purkinje cell protein 2 Neighboring gene calmodulin regulated spectrin associated protein family member 3 Neighboring gene uncharacterized LOC134471004 Neighboring gene patatin like phospholipase domain containing 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in generation of catalytic spliceosome for first transesterification step IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of Prp19 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of post-mRNA release spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pre-mRNA-splicing factor SYF1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947500.1 Reference mCavPor4.1

    Range
    63049143..63056786
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003468373.5 → XP_003468421.1  pre-mRNA-splicing factor SYF1

    UniProtKB/TrEMBL
    H0VE99
    Related
    ENSCPOP00000008334.2
    Conserved Domains (3) summary
    TIGR02521
    Location:486 → 626
    type_IV_pilW; type IV pilus biogenesis/stability protein PilW
    COG0457
    Location:272 → 549
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    sd00006
    Location:389 → 424
    TPR; TPR repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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