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Cbx3 chromobox 3 [ Cavia porcellus (domestic guinea pig) ]

Gene ID: 100714020, updated on 3-Apr-2024

Summary

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Gene symbol
Cbx3
Gene description
chromobox 3
See related
Ensembl:ENSCPOG00000015168
Gene type
protein coding
RefSeq status
MODEL
Organism
Cavia porcellus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Hystricomorpha; Caviidae; Cavia
Orthologs
human mouse all
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Genomic context

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See Cbx3 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current mCavPor4.1 (GCF_034190915.1) Unplaced Scaffold NW_026947485.1 (28661557..28671369)
103 previous assembly Cavpor3.0 (GCF_000151735.1) Unplaced Scaffold NT_176375.1 (3077423..3087227)

NW_026947485.1Genomic Context describing neighboring genes Neighboring gene NFE2 like bZIP transcription factor 3 Neighboring gene heterogeneous nuclear ribonucleoprotein A2/B1 Neighboring gene uncharacterized LOC134473877 Neighboring gene sorting nexin 10 Neighboring gene uncharacterized LOC134473882

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables methylated histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of pericentric heterochromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
chromobox protein homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_034190915.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCavPor4.1

Genomic

  1. NW_026947485.1 Reference mCavPor4.1

    Range
    28661557..28671369
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003467936.5 → XP_003467984.1  chromobox protein homolog 3 isoform X1

    See identical proteins and their annotated locations for XP_003467984.1

    UniProtKB/TrEMBL
    A0A286XXM2, H0VSQ8
    Related
    ENSCPOP00000030034.1
    Conserved Domains (2) summary
    cd18652
    Location:29 → 78
    CD_HP1gamma_Cbx3; chromodomain of heterochromatin protein 1 homolog gamma
    cd18656
    Location:116 → 173
    CSD_HP1gamma_Cbx3; chromo shadow domain of heterochromatin protein 1 gamma homolog gamma

  2. XM_063239646.1 → XP_063095716.1  chromobox protein homolog 3 isoform X2

  3. XM_063239628.1 → XP_063095698.1  chromobox protein homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A286XXM2

  4. XM_063239633.1 → XP_063095703.1  chromobox protein homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A286XXM2

  5. XM_063239635.1 → XP_063095705.1  chromobox protein homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A286XXM2

  6. XM_063239643.1 → XP_063095713.1  chromobox protein homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A286XXM2
Nucleotide Protein
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