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bloc1s1 biogenesis of lysosomal organelles complex-1, subunit 1 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100710617, updated on 8-Mar-2024

Summary

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Gene symbol
bloc1s1
Gene description
biogenesis of lysosomal organelles complex-1, subunit 1
See related
Ensembl:ENSONIG00000006840
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Ubiquitous expression in ovary (RPKM 36.4), brain (RPKM 26.5) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG5
Exon count:
4
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG5 NC_031970.2 (7826918..7831374)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG5 NC_031970.1 (18915970..18920434)

Linkage Group LG5 - NC_031970.2Genomic Context describing neighboring genes Neighboring gene peroxisomal membrane protein 4 Neighboring gene itchy E3 ubiquitin protein ligase a Neighboring gene retinol dehydrogenase 5 (11-cis/9-cis) Neighboring gene glutaminase 2b (liver, mitochondrial)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endosomal transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BLOC-1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
biogenesis of lysosome-related organelles complex 1 subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031970.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    7826918..7831374
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003456089.5 → XP_003456137.1  biogenesis of lysosome-related organelles complex 1 subunit 1

    See identical proteins and their annotated locations for XP_003456137.1

    UniProtKB/TrEMBL
    A0A669EH92, I3JID7
    Related
    ENSONIP00000070466.1, ENSONIT00000087596.1
    Conserved Domains (1) summary
    pfam06320
    Location:5 → 117
    GCN5L1; GCN5-like protein 1 (GCN5L1)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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