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elac2 elaC ribonuclease Z 2 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100705666, updated on 8-Mar-2024

Summary

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Gene symbol
elac2
Gene description
elaC ribonuclease Z 2
See related
Ensembl:ENSONIG00000009569
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 29.1), testis (RPKM 13.1) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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See elac2 in Genome Data Viewer
Location:
chromosome: LG4
Exon count:
25
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG4 NC_031969.2 (30961735..30978634)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG4 NC_031969.1 (5810777..5827631, complement)

Linkage Group LG4 - NC_031969.2Genomic Context describing neighboring genes Neighboring gene transmembrane protein 220 Neighboring gene mitogen-activated protein kinase kinase 4a Neighboring gene uncharacterized LOC112846630 Neighboring gene uncharacterized LOC102079657 Neighboring gene uncharacterized LOC109201882

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-tRNA processing endoribonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial tRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc phosphodiesterase ELAC protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031969.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    30961735..30978634
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005469055.3 → XP_005469112.1  zinc phosphodiesterase ELAC protein 2 isoform X3

    UniProtKB/TrEMBL
    I3JT31
    Conserved Domains (3) summary
    COG1234
    Location:463 → 735
    ElaC; Ribonuclease BN, tRNA processing enzyme [Translation, ribosomal structure and biogenesis]
    cd07718
    Location:464 → 666
    RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
    cl23716
    Location:45 → 290
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  2. XM_003442497.5 → XP_003442545.2  zinc phosphodiesterase ELAC protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A669BVJ0, I3JT31
    Related
    ENSONIP00000039393.1, ENSONIT00000089343.1
    Conserved Domains (3) summary
    COG1234
    Location:504 → 776
    ElaC; Ribonuclease BN, tRNA processing enzyme [Translation, ribosomal structure and biogenesis]
    cd07718
    Location:505 → 707
    RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
    cl23716
    Location:86 → 331
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain

  3. XM_005469054.4 → XP_005469111.1  zinc phosphodiesterase ELAC protein 2 isoform X2

    UniProtKB/TrEMBL
    I3JT31
    Related
    ENSONIP00000012026.2, ENSONIT00000012035.2
    Conserved Domains (3) summary
    COG1234
    Location:472 → 744
    ElaC; Ribonuclease BN, tRNA processing enzyme [Translation, ribosomal structure and biogenesis]
    cd07718
    Location:473 → 675
    RNaseZ_ELAC1_ELAC2-C-term-like_MBL-fold; Ribonuclease Z ELAC1, C-terminus of ELAC2, and related proteins; MBL-fold metallo-hydrolase domain
    cl23716
    Location:54 → 299
    metallo-hydrolase-like_MBL-fold; mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain
Nucleotide Protein
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