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tmem100a transmembrane protein 100a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100704597, updated on 8-Mar-2024

Summary

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Gene symbol
tmem100a
Gene description
transmembrane protein 100a
See related
Ensembl:ENSONIG00000021450
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
tmem100
Expression
Broad expression in skin (RPKM 6.5), eye (RPKM 4.6) and 6 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG4
Exon count:
3
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG4 NC_031969.2 (31380458..31383663, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG4 NC_031969.1 (5405752..5408985)

Linkage Group LG4 - NC_031969.2Genomic Context describing neighboring genes Neighboring gene HLF transcription factor, PAR bZIP family member a Neighboring gene monocyte to macrophage differentiation-associated Neighboring gene noggin Neighboring gene phosphatidylcholine transfer protein Neighboring gene chromobox homolog 2 (Drosophila Pc class)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in cellular response to BMP stimulus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transmembrane protein 100

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031969.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    31380458..31383663 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003442493.5 → XP_003442541.1  transmembrane protein 100

    See identical proteins and their annotated locations for XP_003442541.1

    UniProtKB/TrEMBL
    I3L055
    Related
    ENSONIP00000026752.2, ENSONIT00000026776.2
    Conserved Domains (1) summary
    pfam16311
    Location:2 → 131
    TMEM100; Transmembrane protein 100

  2. XM_005469063.4 → XP_005469120.1  transmembrane protein 100

    See identical proteins and their annotated locations for XP_005469120.1

    UniProtKB/TrEMBL
    I3L055
    Conserved Domains (1) summary
    pfam16311
    Location:2 → 131
    TMEM100; Transmembrane protein 100
Nucleotide Protein
Heading Accession and Version

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