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hivep2a HIVEP zinc finger 2a [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100703807, updated on 8-Mar-2024

Summary

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Gene symbol
hivep2a
Gene description
HIVEP zinc finger 2a
See related
Ensembl:ENSONIG00000018691
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
hivep2
Expression
Broad expression in brain (RPKM 8.5), skin (RPKM 3.9) and 7 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG15
Exon count:
19
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG15 NC_031980.2 (22678767..22796437)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG15 NC_031980.1 (8290802..8408477)

Linkage Group LG15 - NC_031980.2Genomic Context describing neighboring genes Neighboring gene activating transcription factor 3 Neighboring gene peroxisomal biogenesis factor 3 Neighboring gene adenosine deaminase tRNA specific 2 Neighboring gene uncharacterized LOC112842389 Neighboring gene E2F transcription factor 6

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor HIVEP2
Names
HIVEP zinc finger 2
human immunodeficiency virus type I enhancer binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031980.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    22678767..22796437
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005452402.4 → XP_005452459.1  transcription factor HIVEP2

    See identical proteins and their annotated locations for XP_005452459.1

    UniProtKB/TrEMBL
    I3KQY3
    Conserved Domains (3) summary
    sd00017
    Location:199 → 219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1765 → 1787
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:212 → 236
    zf-H2C2_2; Zinc-finger double domain

  2. XM_005452403.4 → XP_005452460.1  transcription factor HIVEP2

    See identical proteins and their annotated locations for XP_005452460.1

    UniProtKB/TrEMBL
    I3KQY3
    Conserved Domains (3) summary
    sd00017
    Location:199 → 219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1765 → 1787
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:212 → 236
    zf-H2C2_2; Zinc-finger double domain

  3. XM_003446649.5 → XP_003446697.1  transcription factor HIVEP2

    See identical proteins and their annotated locations for XP_003446697.1

    UniProtKB/TrEMBL
    I3KQY3
    Related
    ENSONIP00000023528.2, ENSONIT00000023549.2
    Conserved Domains (3) summary
    sd00017
    Location:199 → 219
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:1765 → 1787
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:212 → 236
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
Heading Accession and Version

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