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myo18ab myosin XVIIIA b [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100702052, updated on 8-Mar-2024

Summary

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Gene symbol
myo18ab
Gene description
myosin XVIIIA b
See related
Ensembl:ENSONIG00000014799
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Also known as
myo18a
Expression
Ubiquitous expression in heart (RPKM 6.4), kidney (RPKM 4.4) and 9 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG14
Exon count:
50
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG14 NC_031979.2 (1688885..1824524)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG14 NC_031979.1 (38647738..38783385)

Linkage Group LG14 - NC_031979.2Genomic Context describing neighboring genes Neighboring gene lectin, galactoside-binding, soluble, 9 (galectin 9)-like 3 Neighboring gene uncharacterized LOC106097413 Neighboring gene pipecolic acid oxidase Neighboring gene uncharacterized LOC106096951

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables cytoskeletal motor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
unconventional myosin-XVIIIa
Names
myosin XVIIIA
myosin XVIIIAb

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031979.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    1688885..1824524
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_019367496.2 → XP_019223041.1  unconventional myosin-XVIIIa isoform X5

    UniProtKB/TrEMBL
    A0A669DYK7
    Related
    ENSONIP00000063881.1, ENSONIT00000035914.1

  2. XM_013266182.3 → XP_013121636.2  unconventional myosin-XVIIIa isoform X6

    UniProtKB/TrEMBL
    A0A669C5N9
    Related
    ENSONIP00000042150.1, ENSONIT00000061485.1

  3. XM_013266186.3 → XP_013121640.2  unconventional myosin-XVIIIa isoform X11

    UniProtKB/TrEMBL
    A0A669C5N9

  4. XM_025898191.1 → XP_025753976.1  unconventional myosin-XVIIIa isoform X4

    UniProtKB/TrEMBL
    A0A669E2J4
    Related
    ENSONIP00000065281.1, ENSONIT00000068987.1
    Conserved Domains (3) summary
    cd01386
    Location:476 → 1215
    MYSc_Myo18; class XVIII myosin, motor domain
    cl25574
    Location:1853 → 2131
    TOP2c; TopoisomeraseII
    cl27381
    Location:447 → 1950
    Myosin_head; Myosin head (motor domain)

  5. XM_013266187.3 → XP_013121641.2  unconventional myosin-XVIIIa isoform X9

    UniProtKB/TrEMBL
    A0A669E2J4

  6. XM_025898192.1 → XP_025753977.1  unconventional myosin-XVIIIa isoform X7

    UniProtKB/TrEMBL
    A0A669CJB0
    Conserved Domains (2) summary
    cd01386
    Location:38 → 777
    MYSc_Myo18; class XVIII myosin, motor domain
    cl27381
    Location:9 → 1512
    Myosin_head; Myosin head (motor domain)

  7. XM_025898193.1 → XP_025753978.1  unconventional myosin-XVIIIa isoform X8

    UniProtKB/TrEMBL
    A0A669CJB0
    Conserved Domains (2) summary
    cd01386
    Location:38 → 777
    MYSc_Myo18; class XVIII myosin, motor domain
    cl27381
    Location:9 → 1512
    Myosin_head; Myosin head (motor domain)

  8. XM_025898190.1 → XP_025753975.1  unconventional myosin-XVIIIa isoform X3

    UniProtKB/TrEMBL
    A0A669E2J4
    Conserved Domains (3) summary
    cd01386
    Location:38 → 777
    MYSc_Myo18; class XVIII myosin, motor domain
    cl25574
    Location:1415 → 1673
    TOP2c; TopoisomeraseII
    cl27381
    Location:9 → 1512
    Myosin_head; Myosin head (motor domain)

  9. XM_025898189.1 → XP_025753974.1  unconventional myosin-XVIIIa isoform X2

    UniProtKB/TrEMBL
    A0A669E2J4
    Conserved Domains (3) summary
    cd01386
    Location:38 → 773
    MYSc_Myo18; class XVIII myosin, motor domain
    cl25574
    Location:1411 → 1689
    TOP2c; TopoisomeraseII
    cl27381
    Location:9 → 1508
    Myosin_head; Myosin head (motor domain)

  10. XM_025898188.1 → XP_025753973.1  unconventional myosin-XVIIIa isoform X1

    UniProtKB/TrEMBL
    A0A669E2J4
    Conserved Domains (3) summary
    cd01386
    Location:38 → 773
    MYSc_Myo18; class XVIII myosin, motor domain
    cl25574
    Location:1411 → 1689
    TOP2c; TopoisomeraseII
    cl27381
    Location:9 → 1508
    Myosin_head; Myosin head (motor domain)

  11. XM_025898194.1 → XP_025753979.1  unconventional myosin-XVIIIa isoform X10

    UniProtKB/TrEMBL
    A0A669CJB0
    Related
    ENSONIP00000047435.1, ENSONIT00000058807.1
    Conserved Domains (2) summary
    cd01386
    Location:38 → 777
    MYSc_Myo18; class XVIII myosin, motor domain
    cl27381
    Location:9 → 1512
    Myosin_head; Myosin head (motor domain)
Nucleotide Protein
Heading Accession and Version

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