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tyw3 tRNA-yW synthesizing protein 3 homolog (S. cerevisiae) [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100698917, updated on 8-Mar-2024

Summary

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Gene symbol
tyw3
Gene description
tRNA-yW synthesizing protein 3 homolog (S. cerevisiae)
See related
Ensembl:ENSONIG00000033324
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 62.1), testis (RPKM 31.6) and 8 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG18
Exon count:
6
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG18 NC_031982.2 (5113740..5119078, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG18 NC_031982.1 (64905..70268, complement)

Linkage Group LG18 - NC_031982.2Genomic Context describing neighboring genes Neighboring gene palmdelphin a Neighboring gene phospholipid phosphatase-related protein type 5 Neighboring gene uncharacterized LOC112842924 Neighboring gene uncharacterized LOC109195356 Neighboring gene phospholipid phosphatase related 4a Neighboring gene uncharacterized LOC112842745

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables tRNA methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tRNA wybutosine-synthesizing protein 3 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031982.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    5113740..5119078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003459965.5 → XP_003460013.1  tRNA wybutosine-synthesizing protein 3 homolog isoform X2

    UniProtKB/TrEMBL
    A0A669CUB4
    Related
    ENSONIP00000049874.1, ENSONIT00000061677.1
    Conserved Domains (1) summary
    pfam02676
    Location:9 → 183
    TYW3; Methyltransferase TYW3

  2. XM_005465799.4 → XP_005465856.1  tRNA wybutosine-synthesizing protein 3 homolog isoform X1

    Conserved Domains (1) summary
    pfam02676
    Location:9 → 183
    TYW3; Methyltransferase TYW3
Nucleotide Protein
Heading Accession and Version

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