U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

pop1 POP1 homolog, ribonuclease P/MRP subunit [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100695360, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
pop1
Gene description
POP1 homolog, ribonuclease P/MRP subunit
See related
Ensembl:ENSONIG00000016445
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Broad expression in ovary (RPKM 20.9), testis (RPKM 17.7) and 9 other tissues See more
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: LG11
Exon count:
16
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG11 NC_031976.2 (6401688..6412850, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG11 NC_031976.1 (31307801..31318935, complement)

Linkage Group LG11 - NC_031976.2Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel modifier subfamily S member 2 Neighboring gene NIPA like domain containing 2 Neighboring gene reactive intermediate imine deaminase A homolog Neighboring gene fibrous sheath CABYR-binding protein Neighboring gene matrilin 2

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in tRNA 5'-leader removal IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nucleolar ribonuclease P complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonuclease MRP complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
ribonucleases P/MRP protein subunit POP1
Names
processing of precursor 1, ribonuclease P/MRP subunit

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031976.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    6401688..6412850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005464919.4 → XP_005464976.1  ribonucleases P/MRP protein subunit POP1

    UniProtKB/TrEMBL
    A0A669DTD9, I3KHW8
    Related
    ENSONIP00000020713.1, ENSONIT00000020731.2
    Conserved Domains (2) summary
    pfam06978
    Location:103 → 250
    POP1; Ribonucleases P/MRP protein subunit POP1
    pfam08170
    Location:611 → 700
    POPLD; POPLD (NUC188) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.