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cdkn3 cyclin-dependent kinase inhibitor 3 [ Oreochromis niloticus (Nile tilapia) ]

Gene ID: 100694859, updated on 8-Mar-2024

Summary

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Gene symbol
cdkn3
Gene description
cyclin-dependent kinase inhibitor 3
See related
Ensembl:ENSONIG00000019575
Gene type
protein coding
RefSeq status
MODEL
Organism
Oreochromis niloticus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Cichlomorphae; Cichliformes; Cichlidae; African cichlids; Pseudocrenilabrinae; Oreochromini; Oreochromis
Expression
Biased expression in ovary (RPKM 23.6), testis (RPKM 5.4) and 4 other tissues See more
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: LG19
Exon count:
8
Annotation release Status Assembly LG Location
104 current O_niloticus_UMD_NMBU (GCF_001858045.2) LG19 NC_031983.2 (22602093..22608094, complement)
103 previous assembly ASM185804v2 (GCF_001858045.1) LG19 NC_031983.1 (8196040..8202232)

Linkage Group LG19 - NC_031983.2Genomic Context describing neighboring genes Neighboring gene lectin, galactoside binding soluble 3a Neighboring gene glia maturation factor, beta Neighboring gene cornichon family member 1 Neighboring gene uncharacterized LOC100706276 Neighboring gene solute carrier family 39 member 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Oreochromis niloticus Transcriptome or Gene expression Oreochromis niloticus Transcriptome or Gene expression
  • Description: Oreochromis niloticus (Nile Tilapia) RNA sequencing from multiple tissues.
  • BioProject: PRJNA78915
  • Analysis date: Fri Dec 29 00:23:36 2017

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cyclin-dependent kinase inhibitor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oreochromis niloticus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference O_niloticus_UMD_NMBU Primary Assembly

Genomic

  1. NC_031983.2 Reference O_niloticus_UMD_NMBU Primary Assembly

    Range
    22602093..22608094 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003445452.4 → XP_003445500.1  cyclin-dependent kinase inhibitor 3

    UniProtKB/TrEMBL
    A0A669EMR7
    Related
    ENSONIP00000074186.1, ENSONIT00000072231.1
    Conserved Domains (1) summary
    cl21483
    Location:1 → 163
    PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...
Nucleotide Protein
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