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LOC100677432 zinc finger protein 580 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100677432, updated on 6-Jun-2024

Summary

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Gene symbol
LOC100677432
Gene description
zinc finger protein 580
See related
EnsemblRapid:ENSLAFG00000036003
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
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Genomic context

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See LOC100677432 in Genome Data Viewer
Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 11 NC_087352.1 (24678821..24681164)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573424.1 (16874070..16876379)

Chromosome 11 - NC_087352.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111749634 Neighboring gene zinc finger protein 580 Neighboring gene zinc finger protein 581 Neighboring gene coiled-coil domain containing 106

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
zinc finger protein 580

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087352.1 Reference mLoxAfr1.hap2

    Range
    24678821..24681164
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010586623.2 → XP_010584925.1  zinc finger protein 580 isoform X2

    UniProtKB/TrEMBL
    G3TLS9
    Conserved Domains (3) summary
    sd00017
    Location:94 → 114
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:120 → 142
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:107 → 131
    zf-H2C2_2; Zinc-finger double domain

  2. XM_064294291.1 → XP_064150361.1  zinc finger protein 580 isoform X2

    UniProtKB/TrEMBL
    G3TLS9

  3. XM_003406869.4 → XP_003406917.2  zinc finger protein 580 isoform X1

    Related
    ENSLAFP00000041355.1, ENSLAFT00000041697.1
    Conserved Domains (3) summary
    sd00017
    Location:122 → 142
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:148 → 170
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:135 → 159
    zf-H2C2_2; Zinc-finger double domain
Nucleotide Protein
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