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TRIM56 tripartite motif containing 56 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100675965, updated on 6-Jun-2024

Summary

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Gene symbol
TRIM56
Gene description
tripartite motif containing 56
See related
EnsemblRapid:ENSLAFG00000043549
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 12 NC_087353.1 (88613948..88621460)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573465.1 (73578..78384)

Chromosome 12 - NC_087353.1Genomic Context describing neighboring genes Neighboring gene mucin-12-like Neighboring gene mucin-2-like Neighboring gene mucin-17 Neighboring gene serpin family E member 1 Neighboring gene adaptor related protein complex 1 subunit sigma 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein monoubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase TRIM56

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087353.1 Reference mLoxAfr1.hap2

    Range
    88613948..88621460
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003416578.4 → XP_003416626.2  E3 ubiquitin-protein ligase TRIM56

    UniProtKB/TrEMBL
    G3UEQ5
    Related
    ENSLAFP00000030674.1, ENSLAFT00000053518.1

  2. XM_023555853.2 → XP_023411621.2  E3 ubiquitin-protein ligase TRIM56

    UniProtKB/TrEMBL
    G3UEQ5
    Related
    ENSLAFP00000032853.1, ENSLAFT00000063875.1
Nucleotide Protein
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