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LOC100675856 cystatin-C [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100675856, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100675856
Gene description
cystatin-C
See related
EnsemblRapid:ENSLAFG00000042162
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Also known as
CST3
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Genomic context

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Location:
chromosome: 24
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 24 NC_087365.1 (2721414..2726529)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573439.1 (2699228..2704329)

Chromosome 24 - NC_087365.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene synapse differentiation inducing 1 Neighboring gene ATP synthase subunit a-like Neighboring gene cystatin-9-like Neighboring gene cystatin-13-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type endopeptidase inhibitor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of cysteine-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cystatin-C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087365.1 Reference mLoxAfr1.hap2

    Range
    2721414..2726529
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003411620.4 → XP_003411668.1  cystatin-C

    UniProtKB/TrEMBL
    G3TEB6
    Related
    ENSLAFP00000043898.1, ENSLAFT00000060724.1
    Conserved Domains (1) summary
    smart00043
    Location:34 → 144
    CY; Cystatin-like domain
Nucleotide Protein
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