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ROM1 retinal outer segment membrane protein 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100672658, updated on 11-Apr-2024

Summary

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Gene symbol
ROM1
Gene description
retinal outer segment membrane protein 1
See related
EnsemblRapid:ENSLAFG00000009942
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 7 NC_087348.1 (12191667..12195079, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573491.1 (6875537..6877537, complement)

Chromosome 7 - NC_087348.1Genomic Context describing neighboring genes Neighboring gene glucosidase II alpha subunit Neighboring gene beta-1,3-glucuronyltransferase 3 Neighboring gene EMAP like 3 Neighboring gene metastasis associated 1 family member 2 Neighboring gene terminal uridylyl transferase 1, U6 snRNA-specific

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in visual perception IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
rod outer segment membrane protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087348.1 Reference mLoxAfr1.hap2

    Range
    12191667..12195079 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003419474.4 → XP_003419522.1  rod outer segment membrane protein 1

    UniProtKB/TrEMBL
    G3T4M7
    Related
    ENSLAFP00000008326.1, ENSLAFT00000009942.2
    Conserved Domains (2) summary
    cd03162
    Location:133 → 265
    peripherin_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), peripherin_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:133 → 274
    Tetraspannin; Tetraspanin family
Nucleotide Protein
Heading Accession and Version

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