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IFFO1 intermediate filament family orphan 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100671465, updated on 6-Jun-2024

Summary

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Gene symbol
IFFO1
Gene description
intermediate filament family orphan 1
See related
EnsemblRapid:ENSLAFG00000002782
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See IFFO1 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 4 NC_087345.1 (133969748..133984706)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573435.1 (51380881..51395724, complement)

Chromosome 4 - NC_087345.1Genomic Context describing neighboring genes Neighboring gene chromodomain helicase DNA binding protein 4 Neighboring gene small Cajal body-specific RNA 11 Neighboring gene NOP2 nucleolar protein Neighboring gene uncharacterized LOC135231250 Neighboring gene glyceraldehyde-3-phosphate dehydrogenase Neighboring gene non-SMC condensin I complex subunit D2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
non-homologous end joining factor IFFO1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087345.1 Reference mLoxAfr1.hap2

    Range
    133969748..133984706
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003410640.4 → XP_003410688.1  non-homologous end joining factor IFFO1 isoform X2

    UniProtKB/TrEMBL
    G3SR51
    Related
    ENSLAFP00000021990.2, ENSLAFT00000036953.2
    Conserved Domains (1) summary
    pfam00038
    Location:233 → 533
    Filament; Intermediate filament protein

  2. XM_010590825.2 → XP_010589127.1  non-homologous end joining factor IFFO1 isoform X1

    UniProtKB/TrEMBL
    G3SR51
    Related
    ENSLAFP00000002329.4, ENSLAFT00000002782.4
    Conserved Domains (1) summary
    pfam00038
    Location:233 → 522
    Filament; Intermediate filament protein
Nucleotide Protein
Heading Accession and Version

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