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CLDN5 claudin 5 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100670177, updated on 11-Apr-2024

Summary

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Gene symbol
CLDN5
Gene description
claudin 5
See related
EnsemblRapid:ENSLAFG00000011077
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 19 NC_087360.1 (32542815..32550639, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573488.1 (10859968..10863677, complement)

Chromosome 19 - NC_087360.1Genomic Context describing neighboring genes Neighboring gene chromosome 19 C22orf39 homolog Neighboring gene ubiquitin recognition factor in ER associated degradation 1 Neighboring gene cell division cycle 45 Neighboring gene septin 5 Neighboring gene glycoprotein Ib platelet subunit beta

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087360.1 Reference mLoxAfr1.hap2

    Range
    32542815..32550639 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023559305.2 → XP_023415073.1  claudin-5

    UniProtKB/TrEMBL
    G3T6U0
    Related
    ENSLAFP00000009268.1, ENSLAFT00000011075.2
    Conserved Domains (1) summary
    cl21598
    Location:5 → 180
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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