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L3MBTL3 L3MBTL histone methyl-lysine binding protein 3 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100667071, updated on 6-Jun-2024

Summary

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Gene symbol
L3MBTL3
Gene description
L3MBTL histone methyl-lysine binding protein 3
See related
EnsemblRapid:ENSLAFG00000014675
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 1
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 1 NC_087342.1 (196755816..196880150)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573420.1 (30639214..30763192, complement)

Chromosome 1 - NC_087342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC135232334 Neighboring gene small nucleolar RNA SNORA57 Neighboring gene Rho GTPase activating protein 18 Neighboring gene sterile alpha motif domain containing 3 Neighboring gene small ribosomal subunit protein eS26-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables chromatin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lethal(3)malignant brain tumor-like protein 3
Names
L3MBTL3, histone methyl-lysine binding protein
l(3)mbt-like 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087342.1 Reference mLoxAfr1.hap2

    Range
    196755816..196880150
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023557609.2 → XP_023413377.1  lethal(3)malignant brain tumor-like protein 3 isoform X1

    UniProtKB/TrEMBL
    G3TDN3
    Conserved Domains (3) summary
    cd09582
    Location:709 → 774
    SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
    smart00561
    Location:451 → 543
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam01530
    Location:557 → 586
    zf-C2HC; Zinc finger, C2HC type

  2. XM_023557697.2 → XP_023413465.1  lethal(3)malignant brain tumor-like protein 3 isoform X2

    UniProtKB/TrEMBL
    G3TR71
    Related
    ENSLAFP00000018079.2, ENSLAFT00000031955.2
    Conserved Domains (3) summary
    cd09582
    Location:684 → 749
    SAM_Scm-like-3MBT3,4; SAM domain of Scm-like-3MBT3,4 proteins of Polycomb group
    smart00561
    Location:426 → 518
    MBT; Present in Drosophila Scm, l(3)mbt, and vertebrate SCML2
    pfam01530
    Location:532 → 561
    zf-C2HC; Zinc finger, C2HC type

  3. XM_064290746.1 → XP_064146816.1  lethal(3)malignant brain tumor-like protein 3 isoform X1

    UniProtKB/TrEMBL
    G3TDN3

  4. XM_064290732.1 → XP_064146802.1  lethal(3)malignant brain tumor-like protein 3 isoform X1

    UniProtKB/TrEMBL
    G3TDN3
    Related
    ENSLAFP00000012291.4, ENSLAFT00000014679.4

  5. XM_064290738.1 → XP_064146808.1  lethal(3)malignant brain tumor-like protein 3 isoform X1

    UniProtKB/TrEMBL
    G3TDN3
Nucleotide Protein
Heading Accession and Version

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