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CLDN19 claudin 19 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100665339, updated on 11-Apr-2024

Summary

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Gene symbol
CLDN19
Gene description
claudin 19
See related
EnsemblRapid:ENSLAFG00000007600
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 3 NC_087344.1 (79321506..79328320, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573454.1 (22238346..22246324, complement)

Chromosome 3 - NC_087344.1Genomic Context describing neighboring genes Neighboring gene peptidylprolyl isomerase H Neighboring gene Y-box binding protein 1 Neighboring gene prolyl 3-hydroxylase 1 Neighboring gene chromosome 3 C1orf50 homolog Neighboring gene transmembrane protein 269

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables structural molecule activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in bicellular tight junction assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in bicellular tight junction IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
claudin-19

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087344.1 Reference mLoxAfr1.hap2

    Range
    79321506..79328320 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023554603.2 → XP_023410371.1  claudin-19 isoform X3

    Conserved Domains (1) summary
    cl21598
    Location:4 → 131
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  2. XM_023554602.2 → XP_023410370.1  claudin-19 isoform X2

    Related
    ENSLAFP00000040342.1, ENSLAFT00000065268.1
    Conserved Domains (1) summary
    cl21598
    Location:4 → 182
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

  3. XM_023554600.2 → XP_023410368.1  claudin-19 isoform X1

    Conserved Domains (1) summary
    cl21598
    Location:87 → 192
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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