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XRN1 5'-3' exoribonuclease 1 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100661562, updated on 6-Jun-2024

Summary

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Gene symbol
XRN1
Gene description
5'-3' exoribonuclease 1
See related
EnsemblRapid:ENSLAFG00000015426
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 23
Exon count:
45
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 23 NC_087364.1 (60182726..60292078, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573461.1 (17241649..17350739)

Chromosome 23 - NC_087364.1Genomic Context describing neighboring genes Neighboring gene transcription factor Dp-2 Neighboring gene glycerol kinase 5 Neighboring gene ATR serine/threonine kinase Neighboring gene plastin 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
5'-3' exoribonuclease 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087364.1 Reference mLoxAfr1.hap2

    Range
    60182726..60292078 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064275540.1 → XP_064131610.1  5'-3' exoribonuclease 1 isoform X1

  2. XM_064275546.1 → XP_064131616.1  5'-3' exoribonuclease 1 isoform X7

    Related
    ENSLAFP00000048936.1, ENSLAFT00000060365.1

  3. XM_064275545.1 → XP_064131615.1  5'-3' exoribonuclease 1 isoform X6

    Related
    ENSLAFP00000012933.5, ENSLAFT00000015436.5

  4. XM_064275543.1 → XP_064131613.1  5'-3' exoribonuclease 1 isoform X4

  5. XM_064275541.1 → XP_064131611.1  5'-3' exoribonuclease 1 isoform X2

  6. XM_064275544.1 → XP_064131614.1  5'-3' exoribonuclease 1 isoform X5

  7. XM_064275542.1 → XP_064131612.1  5'-3' exoribonuclease 1 isoform X3

  8. XM_064275547.1 → XP_064131617.1  5'-3' exoribonuclease 1 isoform X8

    UniProtKB/TrEMBL
    G3TF54

  9. XM_064275548.1 → XP_064131618.1  5'-3' exoribonuclease 1 isoform X9

    UniProtKB/TrEMBL
    G3TF54

  10. XM_064275550.1 → XP_064131620.1  5'-3' exoribonuclease 1 isoform X10

RNA

  1. XR_010319142.1 RNA Sequence

Nucleotide Protein
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