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LOC100659288 patatin-like phospholipase domain-containing protein 4 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100659288, updated on 11-Apr-2024

Summary

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Gene symbol
LOC100659288
Gene description
patatin-like phospholipase domain-containing protein 4
See related
EnsemblRapid:ENSLAFG00000017239
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
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Genomic context

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See LOC100659288 in Genome Data Viewer
Location:
chromosome: Y
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) Y NC_087370.1 (18635229..18736018)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573514.1 (3448687..3490299, complement)

Chromosome Y - NC_087370.1Genomic Context describing neighboring genes Neighboring gene cuticle collagen 36-like Neighboring gene anosmin-1 Neighboring gene steryl-sulfatase-like Neighboring gene pseudouridine-5'-phosphatase-like Neighboring gene neuroligin 4 X-linked

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables retinyl-palmitate esterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables triglyceride lipase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in lipid homeostasis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in triglyceride catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in lipid droplet IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
patatin-like phospholipase domain-containing protein 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087370.1 Reference mLoxAfr1.hap2

    Range
    18635229..18736018
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_023539679.2 → XP_023395447.2  patatin-like phospholipase domain-containing protein 4 isoform X1

  2. XM_064278724.1 → XP_064134794.1  patatin-like phospholipase domain-containing protein 4 isoform X2

    Related
    ENSLAFP00000014451.4, ENSLAFT00000017237.4

  3. XM_064278725.1 → XP_064134795.1  patatin-like phospholipase domain-containing protein 4 isoform X3

  4. XM_003420631.4 → XP_003420679.2  patatin-like phospholipase domain-containing protein 4 isoform X1

Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases