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SNX2 sorting nexin 2 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100658068, updated on 11-Apr-2024

Summary

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Gene symbol
SNX2
Gene description
sorting nexin 2
See related
EnsemblRapid:ENSLAFG00000013015
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 2 NC_087343.1 (135174994..135254565, complement)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573421.1 (40039725..40119067, complement)

Chromosome 2 - NC_087343.1Genomic Context describing neighboring genes Neighboring gene PR/SET domain 6 Neighboring gene sorting nexin 24 Neighboring gene peptidylprolyl isomerase C Neighboring gene uncharacterized LOC135228601 Neighboring gene synuclein alpha interacting protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables phosphatidylinositol binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in early endosome to Golgi transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of retromer complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sorting nexin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087343.1 Reference mLoxAfr1.hap2

    Range
    135174994..135254565 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010590414.3 → XP_010588716.1  sorting nexin-2

    UniProtKB/TrEMBL
    G3TAI5
    Related
    ENSLAFP00000010885.3, ENSLAFT00000013016.4
    Conserved Domains (4) summary
    cd07282
    Location:141 → 264
    PX_SNX2; The phosphoinositide binding Phox Homology domain of Sorting Nexin 2
    cd07664
    Location:282 → 515
    BAR_SNX2; The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 2
    COG5391
    Location:51 → 508
    COG5391; Phox homology (PX) domain protein [Intracellular trafficking and secretion / General function prediction only]
    pfam03700
    Location:49 → 111
    Sorting_nexin; Sorting nexin, N-terminal domain
Nucleotide Protein
Heading Accession and Version

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