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WDR83 WD repeat domain 83 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100657077, updated on 11-Apr-2024

Summary

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Gene symbol
WDR83
Gene description
WD repeat domain 83
See related
EnsemblRapid:ENSLAFG00000031530
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See WDR83 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 3 NC_087344.1 (26662855..26667127)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573446.1 (30384748..30389439, complement)

Chromosome 3 - NC_087344.1Genomic Context describing neighboring genes Neighboring gene mannosidase alpha class 2B member 1 Neighboring gene WD repeat domain 83 opposite strand Neighboring gene deoxyhypusine synthase Neighboring gene G protein subunit gamma 14 Neighboring gene F-box and WD repeat domain containing 9

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat domain-containing protein 83

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087344.1 Reference mLoxAfr1.hap2

    Range
    26662855..26667127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003413075.4 → XP_003413123.1  WD repeat domain-containing protein 83 isoform X2

    UniProtKB/TrEMBL
    G3UBB2
    Related
    ENSLAFP00000025120.1, ENSLAFT00000027130.2
    Conserved Domains (3) summary
    COG2319
    Location:11 → 303
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:18 → 295
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:30 → 65
    7WD40; WD40 repeat [structural motif]

  2. XM_010593296.3 → XP_010591598.1  WD repeat domain-containing protein 83 isoform X1

    Related
    ENSLAFP00000048064.1, ENSLAFT00000061733.1
    Conserved Domains (3) summary
    COG2319
    Location:26 → 337
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:50 → 323
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:58 → 93
    7WD40; WD40 repeat [structural motif]
Nucleotide Protein
Heading Accession and Version

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