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USP16 ubiquitin specific peptidase 16 [ Loxodonta africana (African savanna elephant) ]

Gene ID: 100655073, updated on 11-Apr-2024

Summary

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Gene symbol
USP16
Gene description
ubiquitin specific peptidase 16
See related
EnsemblRapid:ENSLAFG00000002380
Gene type
protein coding
RefSeq status
MODEL
Organism
Loxodonta africana
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Afrotheria; Proboscidea; Elephantidae; Loxodonta
Orthologs
human mouse all
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Genomic context

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See USP16 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_04 current mLoxAfr1.hap2 (GCF_030014295.1) 20 NC_087361.1 (51570939..51601952)
102 previous assembly Loxafr3.0 (GCF_000001905.1) Unplaced Scaffold NW_003573433.1 (27110742..27142254, complement)

Chromosome 20 - NC_087361.1Genomic Context describing neighboring genes Neighboring gene N-6 adenine-specific DNA methyltransferase 1 Neighboring gene U6 spliceosomal RNA Neighboring gene listerin E3 ubiquitin protein ligase 1 Neighboring gene RWD domain containing 2B Neighboring gene chaperonin containing TCP1 subunit 8 Neighboring gene MAP3K7 C-terminal like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of cell cycle IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 16

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_030014295.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mLoxAfr1.hap2

Genomic

  1. NC_087361.1 Reference mLoxAfr1.hap2

    Range
    51570939..51601952
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010590332.3 → XP_010588634.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X4

  2. XM_003410318.4 → XP_003410366.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X1

    Related
    ENSLAFP00000001992.4, ENSLAFT00000002380.4

  3. XM_023548486.2 → XP_023404254.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X3

  4. XM_010590330.3 → XP_010588632.2  ubiquitin carboxyl-terminal hydrolase 16 isoform X2

  5. XM_064273134.1 → XP_064129204.1  ubiquitin carboxyl-terminal hydrolase 16 isoform X5

Nucleotide Protein
Heading Accession and Version

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