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FAM162A family with sequence similarity 162 member A [ Sus scrofa (pig) ]

Gene ID: 100627352, updated on 8-Mar-2024

Summary

Official Symbol
FAM162Aprovided by VGNC
Official Full Name
family with sequence similarity 162 member Aprovided by VGNC
Primary source
VGNC:VGNC:87918
See related
Ensembl:ENSSSCG00000026990
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in heart (RPKM 142.7), psoas major muscle (RPKM 107.9) and 8 other tissues See more
Orthologs
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Genomic context

See FAM162A in Genome Data Viewer
Location:
chromosome: 13
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 13 NC_010455.5 (138115499..138151828, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 13 NC_010455.4 (147726442..147762654, complement)

Chromosome 13 - NC_010455.5Genomic Context describing neighboring genes Neighboring gene karyopherin subunit alpha 1 Neighboring gene uncharacterized LOC106505418 Neighboring gene WD repeat domain 5B Neighboring gene mitochondrial matrix import factor 23 Neighboring gene stefin A1

Genomic regions, transcripts, and products

Expression

  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001243573.1NP_001230502.1  protein FAM162A

    Status: VALIDATED

    Source sequence(s)
    AY610395, BI182521, BI186482
    UniProtKB/TrEMBL
    A0A287AXF7, A0A8D0PQ51, A0A8D0R5Y5, A0A8D1HB90, A0A8D1SH87, I3LKD2
    Related
    ENSSSCP00000024546.1, ENSSSCT00000025122.4
    Conserved Domains (1) summary
    pfam06388
    Location:28153
    DUF1075; Protein of unknown function (DUF1075)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010455.5 Reference Sscrofa11.1 Primary Assembly

    Range
    138115499..138151828 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021068491.1XP_020924150.1  protein FAM162A isoform X1