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ATXN1 ataxin 1 [ Sus scrofa (pig) ]

Gene ID: 100623695, updated on 8-Mar-2024

Summary

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Official Symbol
ATXN1provided by VGNC
Official Full Name
ataxin 1provided by VGNC
Primary source
VGNC:VGNC:85687
See related
Ensembl:ENSSSCG00000001065
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Also known as
SCA1
Expression
Ubiquitous expression in ovary (RPKM 2.0), lung (RPKM 1.5) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
19
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (12299938..12730850, complement)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (12896238..13321905, complement)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC106504328 Neighboring gene guanosine monophosphate reductase Neighboring gene uncharacterized LOC110261652 Neighboring gene uncharacterized LOC106504330 Neighboring gene uncharacterized LOC110261653 Neighboring gene uncharacterized LOC110261787

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nervous system development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ataxin-1
Names
spinocerebellar ataxia type 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    12299938..12730850 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021099774.1 → XP_020955433.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  2. XM_013977443.2 → XP_013832897.2  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  3. XM_013977445.2 → XP_013832899.2  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  4. XM_021099771.1 → XP_020955430.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  5. XM_013977447.2 → XP_013832901.2  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  6. XM_013977446.2 → XP_013832900.2  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  7. XM_013977449.2 → XP_013832903.2  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  8. XM_021099775.1 → XP_020955434.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  9. XM_021099772.1 → XP_020955431.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  10. XM_021099776.1 → XP_020955435.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  11. XM_021099778.1 → XP_020955437.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  12. XM_021099777.1 → XP_020955436.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Related
    ENSSSCP00000057609.1, ENSSSCT00000051224.3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III

  13. XM_021099779.1 → XP_020955438.1  ataxin-1

    UniProtKB/TrEMBL
    A0A8D1RMM1, A0A8D1T1T4, F1RUJ3
    Conserved Domains (3) summary
    smart00536
    Location:579 → 694
    AXH; domain in Ataxins and HMG containing proteins
    pfam12547
    Location:397 → 451
    ATXN-1_C; Capicua transcriptional repressor modulator
    cl26386
    Location:13 → 125
    DNA_pol3_gamma3; DNA polymerase III subunits gamma and tau domain III
Nucleotide Protein
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