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PHF8 PHD finger protein 8 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100601220, updated on 8-Mar-2024

Summary

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Gene symbol
PHF8
Gene description
PHD finger protein 8
See related
EnsemblRapid:ENSNLEG00000016157
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See PHF8 in Genome Data Viewer
Location:
chromosome: X
Exon count:
23
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) X NC_044406.1 (37958718..38065283)
102 previous assembly Nleu_3.0 (GCF_000146795.2) X NC_019841.1 (38486539..38593229)

Chromosome X - NC_044406.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene WNK lysine deficient protein kinase 3 Neighboring gene 60S ribosomal protein L37 pseudogene Neighboring gene family with sequence similarity 120 member C Neighboring gene 28S ribosomal protein S18c, mitochondrial pseudogene Neighboring gene 39S ribosomal protein L32, mitochondrial pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein demethylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
histone lysine demethylase PHF8

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044406.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    37958718..38065283
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030806927.1 → XP_030662787.1  histone lysine demethylase PHF8 isoform X1

    UniProtKB/TrEMBL
    G1S293
    Related
    ENSNLEP00000046210.2, ENSNLET00000050597.2
    Conserved Domains (4) summary
    smart00558
    Location:199 → 262
    JmjC; A domain family that is part of the cupin metalloenzyme superfamily
    cd15642
    Location:6 → 57
    PHD_PHF8; PHD finger found in histone lysine demethylase PHF8
    pfam02373
    Location:234 → 334
    JmjC; JmjC domain, hydroxylase
    pfam17811
    Location:338 → 441
    JHD; Jumonji helical domain

  2. XM_012499107.2 → XP_012354561.2  histone lysine demethylase PHF8 isoform X2

    UniProtKB/TrEMBL
    A0A2I3HRS1
    Related
    ENSNLEP00000051113.1, ENSNLET00000079628.1
Nucleotide Protein
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