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SMU1 SMU1 DNA replication regulator and spliceosomal factor [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100595388, updated on 8-Mar-2024

Summary

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Gene symbol
SMU1
Gene description
SMU1 DNA replication regulator and spliceosomal factor
See related
EnsemblRapid:ENSNLEG00000005238
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See SMU1 in Genome Data Viewer
Location:
chromosome: 8
Exon count:
12
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 8 NC_044388.1 (81697243..81727140)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 8 NC_019823.1 (84498586..84528093)

Chromosome 8 - NC_044388.1Genomic Context describing neighboring genes Neighboring gene U4atac minor spliceosomal RNA Neighboring gene beta-1,4-galactosyltransferase 1 Neighboring gene DnaJ heat shock protein family (Hsp40) member A1 Neighboring gene EKC/KEOPS complex subunit LAGE3 pseudogene

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD40 repeat-containing protein SMU1
Names
DNA replication regulator and spliceosomal factor

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044388.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    81697243..81727140
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003263440.4 → XP_003263488.1  WD40 repeat-containing protein SMU1

    See identical proteins and their annotated locations for XP_003263488.1

    UniProtKB/TrEMBL
    G1QZJ0
    Related
    ENSNLEP00000006361.1, ENSNLET00000006686.3
    Conserved Domains (5) summary
    smart00668
    Location:40 → 90
    CTLH; C-terminal to LisH motif
    COG4598
    Location:102 → 218
    HisP; ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
    cd00200
    Location:205 → 512
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:219 → 262
    7WD40; WD40 repeat [structural motif]
    pfam17814
    Location:7 → 36
    LisH_TPL; LisH-like dimerisation domain
Nucleotide Protein
Heading Accession and Version

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