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ATG16L2 autophagy related 16 like 2 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100585982, updated on 8-Mar-2024

Summary

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Gene symbol
ATG16L2
Gene description
autophagy related 16 like 2
See related
EnsemblRapid:ENSNLEG00000017146
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
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Genomic context

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See ATG16L2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
18
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 15 NC_044395.1 (63908212..63923467, complement)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 15 NC_019830.1 (64898683..64915809, complement)

Chromosome 15 - NC_044395.1Genomic Context describing neighboring genes Neighboring gene FCH and double SH3 domains 2 Neighboring gene 60S ribosomal protein L15 pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene StAR related lipid transfer domain containing 10 Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in autophagosome assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative stranded viral RNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in autophagosome membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
autophagy-related protein 16-2
Names
ATG16 autophagy related 16-like 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044395.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    63908212..63923467 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003254754.4 → XP_003254802.1  autophagy-related protein 16-2

    UniProtKB/TrEMBL
    A0A2I3HC25, G1S5R2
    Related
    ENSNLEP00000020850.3, ENSNLET00000021893.4
    Conserved Domains (3) summary
    cd00200
    Location:332 → 619
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:341 → 378
    7WD40; WD40 repeat [structural motif]
    pfam08614
    Location:32 → 203
    ATG16; Autophagy protein 16 (ATG16)
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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