U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

PRDM1 PR/SET domain 1 [ Nomascus leucogenys (northern white-cheeked gibbon) ]

Gene ID: 100585120, updated on 8-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
PRDM1
Gene description
PR/SET domain 1
See related
EnsemblRapid:ENSNLEG00000013211
Gene type
protein coding
RefSeq status
MODEL
Organism
Nomascus leucogenys
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hylobatidae; Nomascus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See PRDM1 in Genome Data Viewer
Location:
chromosome: 3
Exon count:
8
Annotation release Status Assembly Chr Location
103 current Asia_NLE_v1 (GCF_006542625.1) 3 NC_044383.1 (92525249..92548886)
102 previous assembly Nleu_3.0 (GCF_000146795.2) 3 NC_019818.1 (93362274..93385898)

Chromosome 3 - NC_044383.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L35 pseudogene Neighboring gene prolyl endopeptidase Neighboring gene chromatin assembly factor 1 subunit B pseudogene Neighboring gene U6 spliceosomal RNA Neighboring gene autophagy related 5 Neighboring gene crystallin beta-gamma domain containing 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription repressor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone deacetylase binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
PR domain zinc finger protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Nomascus leucogenys Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Asia_NLE_v1 Primary Assembly

Genomic

  1. NC_044383.1 Reference Asia_NLE_v1 Primary Assembly

    Range
    92525249..92548886
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012505906.2 → XP_012361360.1  PR domain zinc finger protein 1 isoform X2

    Related
    ENSNLEP00000053792.1, ENSNLET00000062785.1
    Conserved Domains (4) summary
    sd00017
    Location:541 → 561
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:539 → 561
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:581 → 606
    zf-H2C2_2; Zinc-finger double domain
    cd19187
    Location:45 → 172
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

  2. XM_003278909.3 → XP_003278957.1  PR domain zinc finger protein 1 isoform X1

    UniProtKB/TrEMBL
    G1RS40
    Related
    ENSNLEP00000016062.1, ENSNLET00000016882.4
    Conserved Domains (4) summary
    COG5048
    Location:570 → 688
    COG5048; FOG: Zn-finger [General function prediction only]
    sd00017
    Location:577 → 597
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam13465
    Location:617 → 642
    zf-H2C2_2; Zinc-finger double domain
    cd19187
    Location:81 → 208
    PR-SET_PRDM1; PR-SET domain found in PR domain zinc finger protein 1 (PRDM1) and similar proteins

  3. XM_003278908.3 → XP_003278956.1  PR domain zinc finger protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A2I3GKR4
    Related
    ENSNLEP00000031857.1, ENSNLET00000042777.2
    Conserved Domains (4) summary
    sd00017
    Location:443 → 463
    ZF_C2H2; C2H2 Zn finger [structural motif]
    pfam00096
    Location:441 → 463
    zf-C2H2; Zinc finger, C2H2 type
    pfam13465
    Location:483 → 508
    zf-H2C2_2; Zinc-finger double domain
    cl40432
    Location:3 → 74
    SET; SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.